| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1948 |
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| Symbol | |
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| ID | 7971373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2086928 |
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| End bp | 2087956 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792547 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002943861 |
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| Protein GI | 239814951 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.693179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGC TCACTCGCCT GAACCGCCGC GGTGCCTTGC GCACGCTTTC CGCCCTCCCC
GCCGCCGGCA TCGTGTCGGC CGTGCCGCGC ATCGCGCGCG CCGCGGAGTT CTCGTACAAG
TACGGCAACA ACCTGCCGCT CAGCCATCCG CTGAACATCC GCGCGCAAGA GGCGGCCGAC
CGCATCGCCA AGGAAAGCAA GGGCCGGGTC GAGATCAAGA TCTTTCCCAA CAACCAGCTC
GGCGGCGACA CCGACATGCT GGCACAGGTG CGCTCGGGCG GCATCGAGTT CTTCACGCCC
TCGGCGCTGG TGATTGCCAC GCTGGTGCCG GTGGCCGCCA TCAACGCGGT GGGCTTCGCG
TTCAACGACT ACAGCCAGGT GTGGGGCGCC ATGGACGGCA AGCTCGGCGC GCATGTGCGC
GGCGCCATTG CCAAGTCGCG CCTCTATGCT TTCGAGAAGA TGTGGGACAA CGGCTTTCGC
CAGACCACCA GCAGCAAGGC GCCGGTCACC AGCGCCAAGG ACATGGACGG CCTGAAGATC
CGCGTGCCCG TGAGCCCGCT GTCGATCTCG ATGTTCAAGG GCCTGGGCGC CGCGCCCGCG
AGCCTGCAGT TCAGCGAGGT GTACTCGGCC CTGCAGACCA AGATCGTCGA TGCGCAGGAA
AACCCGCTCC CCATCATCCA GGTGGCCAAG CTGTTCGAGG TGCAGAAGTT CTGCTCGCTC
ACCAACCACA TCTGGGACGG CTACTGGTTC ATTGCCAACG GCCGCGCATG GGAGGCACTG
CCCGACGACC TCAAGACCAT CGTGGCGCGC GCCATCAACG ACGCCGGCAT GCAGCAGCGC
GAAGACATCA AGAAGCTCAA CGAGTCGGTG GTCGGCGACC TGCAGGCCAA GGGCCTCAGC
ATCAACCGCC CGGTGGCCGA GAGCTTTCGC GCCAAGCTGC GCGAATCGGG CTTCTACGGC
GAGTGGAAGG GCCGCTTCGG CCCCGAGGCG TGGGCGCTGC TCGAAGGCGC CGTCGGCAAG
CTGGCCTGA
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| Protein sequence | MTSLTRLNRR GALRTLSALP AAGIVSAVPR IARAAEFSYK YGNNLPLSHP LNIRAQEAAD
RIAKESKGRV EIKIFPNNQL GGDTDMLAQV RSGGIEFFTP SALVIATLVP VAAINAVGFA
FNDYSQVWGA MDGKLGAHVR GAIAKSRLYA FEKMWDNGFR QTTSSKAPVT SAKDMDGLKI
RVPVSPLSIS MFKGLGAAPA SLQFSEVYSA LQTKIVDAQE NPLPIIQVAK LFEVQKFCSL
TNHIWDGYWF IANGRAWEAL PDDLKTIVAR AINDAGMQQR EDIKKLNESV VGDLQAKGLS
INRPVAESFR AKLRESGFYG EWKGRFGPEA WALLEGAVGK LA
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