| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1940 |
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| Symbol | |
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| ID | 7971119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2074756 |
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| End bp | 2077023 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644792539 |
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| Product | exopolysaccharide transport protein family |
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| Protein accession | YP_002943853 |
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| Protein GI | 239814943 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACTC CTGCTGTGAA CACTTCTAAT GCAGCGCGCA TCGGTCAGCC AGTCGCGCCT
TCTACTCCAG GAGCGGGCGA TGACAACATT CACTTGTCGG AACTAATCGA TATCGTGCTC
GACCATAAGT GGTTGGTCAC AGCCATCACC GCACTTTCGC TGGTGCTCGG TTTGGTCTAC
ATACTGTTGT CTACTCCCGT TTACCAATCC AACCTATTAG TCCAGGTAGA GGATGCGGCG
GCTGATGCCA AGGGTTTTCT CGGTGAAACC TCCACCCTTT TTGACGTAAA GACGCCCGCC
ACGGGTGAGA TCCAGGTTAT TCGTTCGCGG ATGGTAATCG GCGCAGCAGT GGACCAGACG
CGCGCCTATA TCGAAGCCAA ACCGAATTAC CTGCCGATAC TCGGCCCATG GCTGGCTCGG
CGGGCCAGCG GACTTTCGGA GCCCGGCTTC CTAGGTATGA GCGGCTACGT CTCCGGCAAA
GAGAAAATCG ATGTCGCACG TTTTGACGTG CCGCCTGCGC TCGAAGACGA AGAGCCCTTC
GTGCTTACCG CTCAGGGTCA AGGCAAGTAC ACGCTCAGTC ACGACGCGCT GGACCAGCCG
CTGGCCGGCA CCGTTGGCCT GCCGCTGCAC CACGTGCTTG ATGACGGCGC CATTGACCTA
CTGATTGACA AGCTCGAAGG CAAGCCTGGC GCACAATTCG TTGTATCGCG CGCGTCGCAA
TTGCACACTA TCGAGGATTT GCAAAAGCGC CTTCAGCTCA TTGAACAGGG CAAGCAATCT
AACGTGATTA GCGCCGCGCT GGAAGACAGC GATCGCGACC GGCTCTCTCG CATTCTCAAT
GCTATTGGCG ATCAATACGT GCAGCAGAAC GTCGAACGTA AGGCGGCAGA GGCACAGAAA
ACACTTGTCT TCCTGAACGA GCAGTTGCCT GAGTTCAAGC GCCAACTCGA AGCCTCTGAA
GACGCCTACA CGCGTTTTCG CAATAAGAAC GGCACCGTGG CTTTCGATGA AGAAGCCAAG
GGCGTGCTGG CCCAAACCAT CGAACTGCAA ACGAAGCTTC TCGAAACCCA GCAGAAGCGC
CGAGAACTGG CCGCGCGTTT TACCGACAGC AACACTCGCG TGAAAACTAT CGACGGGCAG
ATCGCCGCTA TCGAAAAAGA AATCGGTGGT CTCAACGCCC GTGTGAGCCG CATGCCTACG
CTGCAACAGG ATGCGCTGCG CCTCGAGCGC GATGTGCGGG TGAACAGCGG GCTGTATCAG
TCGCTGCAGA ACAATGCGCT GCAGCTGCGT CTAGTTAAGG AAGGAAAGAC TGGGAACGTG
CGCGTGCTCG ACAAAGCAGT GAAGCCTAAA CAGCCAGTCA AACCGCAAAA GCCACTGATT
CTGGCGCTGG CGCTGGCGCT GGGCCTCCTC GTCAGCGGCG CGGCATTGGC AATCGTTCGA
AGCCGCTTCT TCACAGGCAT CCAGGATCCA CAAGAAATCG AGGCCCACAC CGGTCTTTCG
GTCTATTCAG TAGTGCCCTT TACGCCCGAA CAGACAGTGC TCGACCAAGG CGTTGCAACT
GGCGCCAAAG GCATCCAGCT ACTGGCGGTG ACCCATCCGG ACAGCCCGCC GATCGAGGCG
CTCCGCAGCT TGCGGATCGC GCTTCAGTTC GCCACGCTGG AAGCTGGCAA CAACCGCGTG
CTCATCACGG GTGCAACGCC AGGCATTGGC AAGAGCTTTG TTTCGGGCAA CTTCGCGGCC
ATCATGGCGC ATGCCGGCAA GCGCGTGCTC CTGATCGATG CCGACATGCG CAAAGGCCAC
TTGAACAAGC AATTTGGTCT GCCGCGTGAC GGTGGTCTTT CGGAGCTGTT GGCTGGTGAG
CTTTCGGCGC AACAGGCCAT TCGCGCGCAG GTGCTGCCCA ACCTCGACGT GCTGACCACC
GGCAAGCTGC CGACCAACCC GGCCGACATG CTGATGTCGG AAACCTTCAT CCGCACGCTC
GACATGCTCT CGGCGCAGTA TGAACTGGTC ATCATTGACA CCCCTCCGGT GCTGGTGGCT
GCTGACACAG CTGCCGTGGC GCCATACATG GGCGCAGTGC TGCTGGTAGC CCGGGCCGAT
CAAACCCAAC TTGGCGAACT CAACGAAAGC GCCAAGCGCC TCGCACATGC GGGCAAAGCG
GTCAGCGGCG TGATCTTCAA CGGCATCGAC CTGACGCGGC GCCACTACGG TAGCCATGGC
TACCGCTACG GTGGCTACAG GTACACCACG TACAAGTACA ACGAATAA
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| Protein sequence | MNTPAVNTSN AARIGQPVAP STPGAGDDNI HLSELIDIVL DHKWLVTAIT ALSLVLGLVY
ILLSTPVYQS NLLVQVEDAA ADAKGFLGET STLFDVKTPA TGEIQVIRSR MVIGAAVDQT
RAYIEAKPNY LPILGPWLAR RASGLSEPGF LGMSGYVSGK EKIDVARFDV PPALEDEEPF
VLTAQGQGKY TLSHDALDQP LAGTVGLPLH HVLDDGAIDL LIDKLEGKPG AQFVVSRASQ
LHTIEDLQKR LQLIEQGKQS NVISAALEDS DRDRLSRILN AIGDQYVQQN VERKAAEAQK
TLVFLNEQLP EFKRQLEASE DAYTRFRNKN GTVAFDEEAK GVLAQTIELQ TKLLETQQKR
RELAARFTDS NTRVKTIDGQ IAAIEKEIGG LNARVSRMPT LQQDALRLER DVRVNSGLYQ
SLQNNALQLR LVKEGKTGNV RVLDKAVKPK QPVKPQKPLI LALALALGLL VSGAALAIVR
SRFFTGIQDP QEIEAHTGLS VYSVVPFTPE QTVLDQGVAT GAKGIQLLAV THPDSPPIEA
LRSLRIALQF ATLEAGNNRV LITGATPGIG KSFVSGNFAA IMAHAGKRVL LIDADMRKGH
LNKQFGLPRD GGLSELLAGE LSAQQAIRAQ VLPNLDVLTT GKLPTNPADM LMSETFIRTL
DMLSAQYELV IIDTPPVLVA ADTAAVAPYM GAVLLVARAD QTQLGELNES AKRLAHAGKA
VSGVIFNGID LTRRHYGSHG YRYGGYRYTT YKYNE
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