Gene Vapar_1916 details

Gene Information

• Locus tag: Vapar_1916
• ID: 7971095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2049893
• End bp: 2050546
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 644792516
• Product: isochorismatase hydrolase
• Protein accession: YP_002943830
• Protein GI: 239814920
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTTTC GCAACGGCCT GGCTTCGCTT CTTCGCCCCG AAGACTCGGT ACTCGTTCTC 
ATCGACCACC AGCCCTACCA GCTCTCCAAC CTGAACAGCC ATGACCCGCA GGCCGTGGTG 
AACAACACGA CCGCGCTGGC GAAGCTTGCA AAAGCCTTCA ATGTTCCGAC CATTCTCACC 
AGCGTGATCG CGGCGCGCGG TGGACTTCTC TTCAAGCAGA TCACCGACGT ATTTCCAGAC 
CAGGAAGTCA TCGATCGCAC CTGGGTGAAC ACCTGGCAGG ACGAGAATGT GGTGAGCGTC 
GTCAAGGCGA CTGGCCGCAA GCAACTGATC ATCGCCGGCC TGTGGACCGA GGTCTGCGTC 
GCAATGCCTG TCATCCAGGC CGCCGGCGAA GGCTGGGATG TGACCGTGAT CACCGACGCA 
TCGGGCGGGA TTTCGAAGGA GTCTCACGAA GTTGCCATCC AGCGAATGAT TGCGGCCGGC 
GCGAACGTGA TGACCGTGAT GGCGCTCTGT GGCGAATGGC AACGCGATTG GGCGCGCACC 
GAGCACGTCG AGGAACTGAC CGAGATTCTC ATCCAGCACT TCGCCGGCAG CGGCATCGCG 
TATCTTTGGG AGCAGCAGTT GCTCAACACG CCTGTGCCTG CCAAGGCAGG ATGA 

 

Protein sequence

MTFRNGLASL LRPEDSVLVL IDHQPYQLSN LNSHDPQAVV NNTTALAKLA KAFNVPTILT 
SVIAARGGLL FKQITDVFPD QEVIDRTWVN TWQDENVVSV VKATGRKQLI IAGLWTEVCV 
AMPVIQAAGE GWDVTVITDA SGGISKESHE VAIQRMIAAG ANVMTVMALC GEWQRDWART 
EHVEELTEIL IQHFAGSGIA YLWEQQLLNT PVPAKAG