Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1871 |
Symbol | |
ID | 7971049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2004366 |
End bp | 2004911 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644792472 |
Product | translation initiation factor IF-3 |
Protein accession | YP_002943787 |
Protein GI | 239814877 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0290] Translation initiation factor 3 (IF-3) |
TIGRFAM ID | [TIGR00168] translation initiation factor IF-3 |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCCGG AAGTCCGCCT TGTAGGCCCG GAAAACGAGC CATTGGGTGT TATGAGTCTC TCCGAGGCCT TGCGCCTCGC CGGTGAGGCT GACGTGGATC TGGTAGAGGT CGTTGCCGCG GCCAATCCGC CCGTGTGCCG TCTGATCGAG TACGGCAAGT TCAAGTACCA CGAGCAGAAG AAGGCGGCCG AGGCCAAGTC GAAGCAGAAG GTCATCGAGG TCAAGGAAAT CAAGTTCCGC CCCGGTACCG ACGACGGCGA CTACAACATC AAGATGCGCA ACATCAAGCG CTTTCTTGAA GAGGGCGACA AATGCAAGAT CACGCTGCGC TTCCGTGGCC GCGAGATCAC GCACCAGGAA CTCGGCCTGG CGCTGCTGCA GCGGATCCGC GATGAGCTGG GCGACCTGAT CGTCGTGGAG CAGTTTCCGA AGCTCGAAGG CCGGCAGATG ATCATGATGA TCGCGCCGGG CCGCAAGAAG CCGGGCGGCG GCGGTGGTGC CGCAAAGCCG GCTTCTTCGG AAGCTTCGGC GCCCGCGGCG GCCTGA
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Protein sequence | MAPEVRLVGP ENEPLGVMSL SEALRLAGEA DVDLVEVVAA ANPPVCRLIE YGKFKYHEQK KAAEAKSKQK VIEVKEIKFR PGTDDGDYNI KMRNIKRFLE EGDKCKITLR FRGREITHQE LGLALLQRIR DELGDLIVVE QFPKLEGRQM IMMIAPGRKK PGGGGGAAKP ASSEASAPAA A
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