| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1863 |
|---|
| Symbol | |
|---|
| ID | 7970880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1994726 |
|---|
| End bp | 1995709 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792464 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943779 |
|---|
| Protein GI | 239814869 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.405454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC TCGCACGCAC CACCGCCCTT GCGGCGCTCA CCTGCCTGGG CGCACTGCTG
CCCGGCCTCG CATCCGCGCA GAACGGCTAT CCCAGCAAGC CGATCCGCGT GATCGTGCCG
TTTGCGGCCG GCAGCACCAC CGACATCATT GCCCGCGCCA TTGCCGACAA GATGAGCCAG
AGCATGGGCC AGACGCTGGT CATCGACAAC CGCGGCGGCG CGAGCGGCAC CATCGGCCAG
CAGGCAGTGG CCACGGCCGC GCCGGACGGC TACACGGTCA TGATCCACTC GTCGTCGCAC
ACGGTGAGCC CCTCCACCTT CGCCAAGCTG CCGTTCGACA CGGTGGGCGA CTTCGCCGGC
ATCACGCCGA TCTCGTCGCT GCCCAACGCG CTGGTGATCT CGCCGGCGAA GAACATCAAG
ACGCTGCCGC AGCTTCTGGC CGCCGCACGC GCCAAGCCCG GGAGCATGAA CTTCGCATCG
GCCGGCCAGG GCAGCGCCAC GCACCTGAAC GCCGAGAAGT TCAAGATGGC CGCGAAGATA
GACGCAACCA ACATTCCCTT CAAGGGATCG GGCGAGGCCG TCACCGAGGT GCTCTCGGGC
CGCGTCGACT ACTACTTCTC GCCCATCGCG CCGGTGATCG GCCAGATCAA GGAGGGCCAG
CTGCTCGCGC TCGCCGTCGG CTCGCCCAAG CGCGCCGCCG CCCTGCCCGA CGTGCCCACC
ACCAGCGAGG CCGGCGTGCC CGGCTCGGAG TTCAATTTCT GGATCGGGAT GATGGCGCCG
GCCAAGACGC CGCGCGACAT CGTCCACCGC CTGCACGACG AAGTGGCAAA GGCGCTGGCC
ACGCCCGAGG TGAAGGAGCG CTTTCTCAAG CTGGGCGCCG ATGCCTGGAC GCTCAAGCCC
GAGCAGTTCG ACGCCTACAT CAAGGACGAG ATCGCGAGCA ATGCCCAGCT CGTGAAGGCC
GCGGGCCTGT CGGTCCAGCA GTAG
|
|---|
| Protein sequence | MKQLARTTAL AALTCLGALL PGLASAQNGY PSKPIRVIVP FAAGSTTDII ARAIADKMSQ
SMGQTLVIDN RGGASGTIGQ QAVATAAPDG YTVMIHSSSH TVSPSTFAKL PFDTVGDFAG
ITPISSLPNA LVISPAKNIK TLPQLLAAAR AKPGSMNFAS AGQGSATHLN AEKFKMAAKI
DATNIPFKGS GEAVTEVLSG RVDYYFSPIA PVIGQIKEGQ LLALAVGSPK RAAALPDVPT
TSEAGVPGSE FNFWIGMMAP AKTPRDIVHR LHDEVAKALA TPEVKERFLK LGADAWTLKP
EQFDAYIKDE IASNAQLVKA AGLSVQQ
|
|---|
| |