Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1831 |
Symbol | |
ID | 7970848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1963482 |
End bp | 1964804 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644792432 |
Product | homoserine dehydrogenase |
Protein accession | YP_002943747 |
Protein GI | 239814837 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0460] Homoserine dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.902916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCCA TCCAAGTAGG CCTGCTCGGC GCAGGCACGG TCGGCAGCGG CACCTTCAAG GTGCTGCTGC GCAATCAGGA AGAAATCAAG CGCCGCGCCG GCCGGGGCAT CGAGATCACG ATGGTGGCCG ACCTGGACGC GGCGCGTGCG CGCGAAGTGG CTGGCGAAGG CGTGAAGGTG GTAGCCGATG CGCGCGAAGT CATCGCCAAC CCGGACATCG ACATCGTCAT CGAGCTCATC GGTGGCTACG GCATTGCGAG GCAACTGGTG CTCGAGGCGA TTGCGGCAGG CAAGCACGTG GTCACAGCCA ACAAGGCGCT GCTTGCGGTG CATGGCACCG AGATCTTCGC GGCCGCGCAT GCCAAGGGCG TGATGGTGGC CTTCGAAGCG GCCGTGGCCG GTGGCATCCC GATCATCAAG GCGCTGCGCG AGGGCCTCAC GGCCAACAGC ATCCAGTGGC TGGCCGGCAT CATCAACGGC ACCACCAACT TCATCCTCTC CGAGATGCGC GACAAGGGGC TCGACTTCGC CACCGTGCTC AAGGAGGCGC AGCGCCTGGG CTACGCCGAA GCCGACCCCA CCTTCGACAT CGAAGGCGTG GACGCCGGCC ACAAGGTCAC GCTGATGAGC GCCATTGCCT TCGGCATTCC GGTGCAGTTC GACAAGGCGC ACATCGAGGG CATCACCAAG CTCGCGGCGC AGGACATCAA GTACGCCGAA CAGCTCGGCT ACCGCATCAA GCTGCTCGGC ATCACCAAGC GCACCGCGCA GGGCATCGAA CTGCGCGTGC ACCCCTCGCT CGTGCCGTCG AAGCGGCTGC TTGCGAACGT CGAAGGCGCG ATGAACGCGG TGGTGGTGCA TGGCGACGCC GTCGGCACCA CGCTGTACTA CGGCAAGGGC GCGGGCAGCG AGCCGACCGC CAGCGCGGTG ATCGCCGACC TCGTCGACAT CACGCGCCTG CACACGGCCG ATGCCGCACA CCGCGTGCCG CACCTGGCCT TCCACCCTGA TGCCATGAGC GACCTGAAGG TGCTGCCGAT GGCCGAGGTG GTTACCAGCT ACTACCTGCG CCTGCGCGTG GCCGACCAGG CCGGCGTGCT TGCCAAGGTC ACGGGCCTCC TGGCCACCGC GGGCATCAGC ATCGACGCGG TGCTGCAGCG CGAAGCCGAC GAAGTGGGCG GCGAGGGCTC GACCCAGACC GACCTGATCA TCCTCACGCA CGATGCGCGC GAAGGCACGG TGAACGACGT GCTCGCCGAA CTGCAGGCCC TGCCCACCGT GCTGCAGCCG ATCGTGCGCA TCCGCAAGGA AGAGCTGTCC TGA
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Protein sequence | MKPIQVGLLG AGTVGSGTFK VLLRNQEEIK RRAGRGIEIT MVADLDAARA REVAGEGVKV VADAREVIAN PDIDIVIELI GGYGIARQLV LEAIAAGKHV VTANKALLAV HGTEIFAAAH AKGVMVAFEA AVAGGIPIIK ALREGLTANS IQWLAGIING TTNFILSEMR DKGLDFATVL KEAQRLGYAE ADPTFDIEGV DAGHKVTLMS AIAFGIPVQF DKAHIEGITK LAAQDIKYAE QLGYRIKLLG ITKRTAQGIE LRVHPSLVPS KRLLANVEGA MNAVVVHGDA VGTTLYYGKG AGSEPTASAV IADLVDITRL HTADAAHRVP HLAFHPDAMS DLKVLPMAEV VTSYYLRLRV ADQAGVLAKV TGLLATAGIS IDAVLQREAD EVGGEGSTQT DLIILTHDAR EGTVNDVLAE LQALPTVLQP IVRIRKEELS
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