| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1790 |
|---|
| Symbol | |
|---|
| ID | 7970806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1927227 |
|---|
| End bp | 1929137 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792390 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_002943706 |
|---|
| Protein GI | 239814796 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATT TCTTCCGCAA GTACAACAAG ATCGTCATGA TTTTCTTGTT CTTGCTGATC
ATTCCCTCGT TCGTCCTCTT TGGCGTGGAG CGCTATCAGG GCTCCGGCGG CGAAGTGAAG
GTTGCGCGGG TCGATGGCCA GAACATCACC CGGCCCGAGT GGGATGCGCA GCACCGTCTC
GAGACCGACC GCATCCGCCA GCAATCGCCC AACGTCGATC CAACGCTGCT CGAATCCGAC
GTGATGCGCT ATGCCACGCT GGAGCGCATG GTGCGCGACC GCGTGCTGGC CGCGGCAGCG
GCCAAGTCGA ACGTGACCAT CTCCGAAGAG CGGCTGTCGC GCATCTTCGC GCAGGACACG
GGCCTTGCGG CCTTCCGCAC GCCGGACGGC AAGTTCGACC GCGAGAGCTT CCAGCGCGTC
ACCGGCCGCA CGCCGGAGCA GTACGAGGCG TCGATGCGCG CCGAGCTGGC CACGCAGCAG
ATGCTGCTGG GCGTCACGGG CACGGCGTTC ACGCCGCCCG CGCTGGCGGC GGCAACCATC
AACGCCTTCT ACGACCGGCG CGAGATCCAG GTCGCGCGCT TCAGCCCCGA GAGCTTCGCG
TCCAAGGTGA CCGTGAGCGA TGCCGACGTG GAGGCCTACT ACAAGGCCCA CACCGCGCAG
TTCCAGGCGC CCGAGCAGGC CAGCATCGAG TACCTGGTGC TCGACCTCGA AGCCGCCAAG
AAGAACATCT CGGTGAACGA GGCCGACCTC AAGACCTACT ACGAGCAGAA CACGGCGCGC
TTCGGCACCA AGGAAGAGCG CCGCGCAAGC CACATCCTGA TCACCGCGCC GGCCAGCGCA
CCGGCAGCCG ACCGCGCCAA GGCCAAGGCC AAGGCGGAGC AATTGCTTGC CGAAGTGAAG
AAGGCGCCCG CCACCTTCGC CGACGTCGCG CGCAAGAATT CGCAGGATCC CGGATCGGCG
GAGAAGGGCG GCGACCTCGA CTTCGTGACG CGCGGTGCAA TGGTCAAGCC TTTCGAGGAT
GCGCTGTTCG CACTCAAGAA GGGCGACATC AGCGACGTGG TCGAAACCGA GTTCGGCTAT
CACATCATTC GCCTCGCCGA CATCAAGCCG GCCGTGGTGC CGCCGTTCGA GCAGGTGCGC
GCCACCATCG AGAACGAAGT CCGTTCGCAG CAGGCGACGC AGGAATTCGC GAAGGCCGCC
GAAACCTTCA CCGATGCGGT CTACCAGCAG CCCGACAGCC TCAAGCCCGC GGCGGAAAAG
CTGAGGCTCA CGATCCAGAC GGCCAGCAAC GTCTCGCGCA CGCCGCCGCC GGGCGCCGCC
GGCGTGCTCG CGAACCGCAA TTTCCTGAAC GCGCTGTTCG CGGCCGATTC GCTGGACCGC
AAGCAGAACA CCGAAGCCAT CGAAGTCGGC TCCAACCAGC TCGCGGCAGG CCGTGTGACG
CAGTACACGC CCGCGCATCC GATGCCGCTG GCCGAGGTCA AGGACAAGAT CCGTGCGCAG
CTCATCACCG AGCGCGCCGC GGTCATGGCC AAGGCCGAGG GCGAAGCCAA GCTCGCCGCC
TGGACCGCCA AGGCCGACGG CGCCACCTTC GGCGCACCGG TCACGGTGTC GCGCCGCGAA
GCGCAGGCCC AGCCCCTTGC CGTCATCGAT GCCGCATTGC GCGCCGATGC GTCCAAGCTG
CCCGCGCTGG TGGGCGTGGA CCTGGGCACG CAAGGCTACG CAGTGGTCCG CGTGACCAAG
GTGGTTCCGC GCACGCCGTC GGCGCCCGAA CAAACGCAGC AGGAGAACGC GCAGGTCGGC
CAGTCGGTGG CTGCGGCGGA AGAAGTTGCG TACTACAACT TGCTGAAGGA ACGCTTCAAG
GCAGAGATCC TCGTGCCGAA GCCGGCGGAG ACGCTGCCGA TGGCCCGCTG A
|
|---|
| Protein sequence | MFDFFRKYNK IVMIFLFLLI IPSFVLFGVE RYQGSGGEVK VARVDGQNIT RPEWDAQHRL
ETDRIRQQSP NVDPTLLESD VMRYATLERM VRDRVLAAAA AKSNVTISEE RLSRIFAQDT
GLAAFRTPDG KFDRESFQRV TGRTPEQYEA SMRAELATQQ MLLGVTGTAF TPPALAAATI
NAFYDRREIQ VARFSPESFA SKVTVSDADV EAYYKAHTAQ FQAPEQASIE YLVLDLEAAK
KNISVNEADL KTYYEQNTAR FGTKEERRAS HILITAPASA PAADRAKAKA KAEQLLAEVK
KAPATFADVA RKNSQDPGSA EKGGDLDFVT RGAMVKPFED ALFALKKGDI SDVVETEFGY
HIIRLADIKP AVVPPFEQVR ATIENEVRSQ QATQEFAKAA ETFTDAVYQQ PDSLKPAAEK
LRLTIQTASN VSRTPPPGAA GVLANRNFLN ALFAADSLDR KQNTEAIEVG SNQLAAGRVT
QYTPAHPMPL AEVKDKIRAQ LITERAAVMA KAEGEAKLAA WTAKADGATF GAPVTVSRRE
AQAQPLAVID AALRADASKL PALVGVDLGT QGYAVVRVTK VVPRTPSAPE QTQQENAQVG
QSVAAAEEVA YYNLLKERFK AEILVPKPAE TLPMAR
|
|---|
| |