Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1783 |
Symbol | uvrC |
ID | 7974525 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1920044 |
End bp | 1922005 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792382 |
Product | excinuclease ABC subunit C |
Protein accession | YP_002943699 |
Protein GI | 239814789 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGACG TGCATTCCGA TCAGTTGCTC AGCGAAGTCG CGGCCCTGCC GCAGCTGCCG GGCGTCTACC GCTATTTCGA CGCGGCCGGC GCGGTGCTCT ACGTGGGCAA GGCGCGCAAC CTCAAGAAGC GGGTTGCCAA CTATTTCCAG AAGAGCCATG GCGGCACGCG CATCGGCCAC ATGATCAGCA AGATCGTGCG CATGGAGACC ACCGTGGTGC GCTCCGAGGC CGAGGCGCTG CTGCTCGAGA ACAATCTCAT CAAGACGCTC AAGCCGCGCT ACAACATCCT GTTCCGCGAC GACAAGAGCT ACCCCTACCT GAAGATCGCC TCGCACGAGT TTCCGCGCCT GGCCTACTAC CGCGGCGCGG TCGACAAGAA GCACCGCTAC TTCGGGCCCT ACCCGAGCGC CTGGGCGGTG AAGGAGTCGA TCCAGCTGCT GCAGAAGGTG TTCAGGCTGC GCACCTGCGA AGACACGGTG TACGCCAACC GCACACGGCC CTGCCTGCTG TACCAGATCA AGCGCTGCAC CGGCCCCTGC GTGGGCTACA TCACGCCCGA GGCCTATGCG CAGGACGTGG CCAGCGCCGA GGCCTTCCTG AGGGGCGACA CCCAGCTCGT GCTCTCCAAG CTCGAGGCGC GCATGACCGA GCACGCCGAG AAGCTCGAAT TCGAACAGGC GGCCGAGCTG CGCAACCAGA TGTCGGCGAT CTCGCGCGTG CTGCACCAGC AGTCGATCGA GATCGCTTCG GACAAGGACG TCGACATCCT TGCCGTCAAG GTGCAGGGCG GCAAGGCCTG CGTCAACCTG GCGATGGTGC GCGGCGGCCG GCACCTGGGC GACCGCGCCT ATTTCCCGGT GCATGTGGAA GACGCCGCGC AGATCCACCA TGGCGAGCTC GATGCGGAAG AGGGCGCAGC GCCCGCCGCG GCCGATCCGA TCGAGGTGCA GGTGCTCGAG GCCTTCATTG CCCAGCACTA CATCGACGTG CCCGTGCCCG CCACGCTGGT GCTGAGCCAC CTGGTGAGCC GCGAGCTGAT CGAGGCGATC TCGCAGCAGG CCGGCGCGCG CGTGACGGCG GTGTTCCAGC CGCGCGAGCA GCGCCGCCAC TGGCTCGAGA TGGCCGAGAC CAACGCCGGC CTGCAACTGG CCCGGCTGCT GGCGGAAGAA GGTTCGCAGC AGGCGCGCAC CCGTGCGCTG GCCGATGCGC TGGAGCTCGC GCCCGACGAT CTCGACAACT TCCGCATCGA ATGCTTCGAC ATCTCGCACA CCGCGGGCGA GGCCACGCAG GCCTCGTGCG TGGTGTTCGA GCACCACACG ATGCAGAACC GCGAATACCG CCGCTACAAC ATCGAGGGCA TCACGCCCGG CGACGACTAC GCCGCGATGC GCCAGGTGCT GCACCGCCGC TATGGCAAGC TGGCCGAGGC CATGGCGGCC GAGACTGAAG CGCTGCCGCC GGGCGACGCC GAGAGCGATG GCGGCGGTGC GCCGCCCAAG ACCCGGACCG CGCGCATGCC GGAACTGGTG CTGGTCGACG GAGGCAAGGG CCAGGTGTCG ATGGCGCGCG AGGTGTTCAG CGAACTGGGC CTGCCGCTGT CGCTCATCGT CGGCGTCGAA AAGGGCGAGG GGCGCAAGGT CGGGCTCGAG GAACTGGTGT TTGCCGATGG CCGCGAGAAG GTCTACCTGG GCAAGGACTC CGCGGCGCTG ATGCTGGTGG CGCAGATCCG CGACGAGGCA CACCGCTTTG CCATCACCGG CATGCGCGCC AAGCGTGCGA AGGTGCGCGT GGGCGGCAGC CAGCTCGAGG ACATTCCGGG CATCGGACCG AAGCGCCGGG CGCGCCTGCT GCAGCGCTTT GGCGGAATCC GCGGCGTGGC GGCCGCCAGC GTCGAGGACA TTGCATCGGT CGAAGGCATT GCTACCGACC TGGCCGAGGA AATCTATCGC GCGCTGCATT GA
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Protein sequence | MSDVHSDQLL SEVAALPQLP GVYRYFDAAG AVLYVGKARN LKKRVANYFQ KSHGGTRIGH MISKIVRMET TVVRSEAEAL LLENNLIKTL KPRYNILFRD DKSYPYLKIA SHEFPRLAYY RGAVDKKHRY FGPYPSAWAV KESIQLLQKV FRLRTCEDTV YANRTRPCLL YQIKRCTGPC VGYITPEAYA QDVASAEAFL RGDTQLVLSK LEARMTEHAE KLEFEQAAEL RNQMSAISRV LHQQSIEIAS DKDVDILAVK VQGGKACVNL AMVRGGRHLG DRAYFPVHVE DAAQIHHGEL DAEEGAAPAA ADPIEVQVLE AFIAQHYIDV PVPATLVLSH LVSRELIEAI SQQAGARVTA VFQPREQRRH WLEMAETNAG LQLARLLAEE GSQQARTRAL ADALELAPDD LDNFRIECFD ISHTAGEATQ ASCVVFEHHT MQNREYRRYN IEGITPGDDY AAMRQVLHRR YGKLAEAMAA ETEALPPGDA ESDGGGAPPK TRTARMPELV LVDGGKGQVS MAREVFSELG LPLSLIVGVE KGEGRKVGLE ELVFADGREK VYLGKDSAAL MLVAQIRDEA HRFAITGMRA KRAKVRVGGS QLEDIPGIGP KRRARLLQRF GGIRGVAAAS VEDIASVEGI ATDLAEEIYR ALH
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