| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1765 |
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| Symbol | |
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| ID | 7974507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1902454 |
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| End bp | 1903212 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792364 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943681 |
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| Protein GI | 239814771 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.634553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATCG ACGGCAAGGT TTTTATCGTG ACCGGTGGCG CCTCGGGCCT CGGCGAAGGC
ACGGCGCGCA TGCTGGCTGC CAATGGCGGC AAGGTGGTGA TCGCCGACAT GCAGGCCGAC
AAGGGTGAAG CCGTCGCCAA GGACATCGGC GGCGTGTTCG TCAAGTGCGA CGTGAGCCAG
GAGGCCGACG GCCAGGCGGC GGTGGCCGCG GCGCAGAAGC TCGGCAAGCT GGTGGGCCTG
GTCAACTGCG CGGGCATCGC GCCGGCCGAA AAGACCGTGG GCAAGAACGG CCCGCATGCG
CTGGCGGTGT TCAGCAAGAC CATCACGGTC AACCTGATCG GCAGCTTCAA CATGATCCGC
CTCGCGGCCG ACGCCATGAG CCGGAACGAG CCCGAAGCCA CGGGCGAGCG CGGCGTGCTG
ATTTCCACCG CATCCGTGGC GGCCTACGAC GGCCAGATCG GCCAGGCCGC CTACAGCGCC
TCCAAGGGCG GCGTGGTCGG CATGACCCTG CCGATCGCGC GCGACCTGGC ACGCAACGGC
ATCCGCAACA TGACCATTGC GCCCGGCATC TTCGGCACGC CCATGCTCTT CGGCATGCCG
CAGGAGGTGC AGGACGCGCT GGCCGCCAGC GTGCCCTTTC CATCCCGCCT GGGCACGCCG
GAGGACTACG CCAAGCTCGC CAAGCACATC ATCGAGAACG ACATGCTCAA CGGCGAGGTG
ATTCGTCTCG ACGGAGCGAT TCGGCTTCCG CCCCGGTGA
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| Protein sequence | MQIDGKVFIV TGGASGLGEG TARMLAANGG KVVIADMQAD KGEAVAKDIG GVFVKCDVSQ
EADGQAAVAA AQKLGKLVGL VNCAGIAPAE KTVGKNGPHA LAVFSKTITV NLIGSFNMIR
LAADAMSRNE PEATGERGVL ISTASVAAYD GQIGQAAYSA SKGGVVGMTL PIARDLARNG
IRNMTIAPGI FGTPMLFGMP QEVQDALAAS VPFPSRLGTP EDYAKLAKHI IENDMLNGEV
IRLDGAIRLP PR
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