| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1747 |
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| Symbol | |
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| ID | 7974489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1881503 |
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| End bp | 1882678 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792346 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002943663 |
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| Protein GI | 239814753 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.877738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGAC GCCATCTCAT CCAGACCGCA GGCCTCACGG CGCTTGCGCT TTCCATGTCG
CTTGCCACTG CGCAGGACAG CAACAAGTTC AAGATCGGCC TGATCCTGCC GATGACGGGG
CAGCAGGCCT CCACCGGCCG GCAGATCGAA GCGGCGGCCC GGCTGTACAT GGCGCAGAAC
GGCGACACCG TGGCGGGCAA GAAGATCGAA CTGATCGTCA AGGACGACGT GGCCACGCCC
GACGTCACCA AGCGCCTCGC GCAGGAACTC ATCGTCAACG ACAAGGTGAA CGTGATCGCG
GGCTTCGGCG TCACGCCGGC CGCGCTGGCC GCCGCGCCGC TGGCCACGCA ATCGAAGACG
CCGCAGGTGG TGATGGCCGC GGCCACGTCG AGCATCACCG AGGCCTCGCC CTACATCGTG
CGTTCGAGCT TCACGCTGCC GCAGGTGTCG GTGGCGATGG GCGACTGGGC ACCCAAGAAC
GGCGTGAAGA CGGTGGTCAC GCTGGTGGCC GACTACGGCC CGGGCAACGA CGCCGAGAAG
TTTTTTACCG AGCGCTTCCA GCTCAACGGC GGCAAGGTGA TCGAGAAGCT GCGCGTGCCG
CTGCGCAACC CCGACTTCGC ACCGTTCCTG CAGAAGGTGC GCGACGCCAA GCCCGATGCG
CTGTTCGTCT TCGTGCCCTC GGGCGCCGGC GCGGCCGTGA TGAAGCAGTT TCTCGAGCGC
GGCATGGACA AGGCCGGCAT CCGCATGATC GCCACCGGCG ACGTGACCGA CGACGACCAG
CTCAACGACA TGGGCGACGG CGCGCTGGGC GTGGTCACCT CGCACCACTA TTCGGCCGCG
CATCCGTCGC CTGCCAACAA GAAGTTCGTC GAGGCCTTCC AGAAGGCCAA CCCGAAGATG
CGCCCCAACT TCATGGCCGT GGGCGGCTAT GACGGCATGC GCGTGATCTA CGAGGCGCTC
AAGGCCACCA AGGGGCAGGG CGGCGGCGAC GCGCTCTTGG CCGCCATGAA GGGCCAGATC
TTCGAGAGCC CGCGCGGGCC GGTCTACATC GACGCGCAGA CGCGCGACAT CGTGCAGGAC
GTGTACCTGC GCAAGGTCGA GAAGAAGGAC GGCCAGCTCT ACAACGTCGA GTTCGATGTG
ATCAAGGGTG TGAAGGATCC GGGCAAGGCG AAGTAA
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| Protein sequence | MQRRHLIQTA GLTALALSMS LATAQDSNKF KIGLILPMTG QQASTGRQIE AAARLYMAQN
GDTVAGKKIE LIVKDDVATP DVTKRLAQEL IVNDKVNVIA GFGVTPAALA AAPLATQSKT
PQVVMAAATS SITEASPYIV RSSFTLPQVS VAMGDWAPKN GVKTVVTLVA DYGPGNDAEK
FFTERFQLNG GKVIEKLRVP LRNPDFAPFL QKVRDAKPDA LFVFVPSGAG AAVMKQFLER
GMDKAGIRMI ATGDVTDDDQ LNDMGDGALG VVTSHHYSAA HPSPANKKFV EAFQKANPKM
RPNFMAVGGY DGMRVIYEAL KATKGQGGGD ALLAAMKGQI FESPRGPVYI DAQTRDIVQD
VYLRKVEKKD GQLYNVEFDV IKGVKDPGKA K
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