| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1740 |
|---|
| Symbol | |
|---|
| ID | 7974482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1873452 |
|---|
| End bp | 1875233 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644792339 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002943656 |
|---|
| Protein GI | 239814746 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.733872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCG CTGAGCCGGC CGTCAGCGGA CGCTCCCTGC ACAAGCGCTT CGTGGCCAAG
GGCTCGAAGC AGGTGGTGCG CGCGCTCGAC GACGTGTCGC TCGAAGTGCC CGCCGGCACG
CTCACGGCGC TGGTCGGACC CGACGGTGCC GGCAAGACCA CGCTGCTGCG GCTCATGGCG
GGCCTGATGC GCGCCGACGA GGGCGAACTG CGCGTGCTCG GCATCGACGT GTCGGCCGAT
CCGCAGGCAG TGCAGGACCG CATCAGCTAC ATGCCGCAGC GCTTCGGCCT CTACGACGAC
CTCAGCGTGC AGGAGAACCT CGACCTCTAC GCCGACCTGC ATGGCGTCTC CGCGGACAAG
CGCCGCGAGC GCTATGCGCG GCTGATGGAA ATGACCGACC TCGGCCGCTT CACCGATCGG
CCCGCGGGCA AGCTCTCGGG CGGCATGAAG CAGAAGCTCG GCCTGGCCTG CACGCTGGTG
CGCTCGCCCG ACCTGCTGCT GCTCGACGAG CCCACCGTGG GCGTCGATCC GCTCTCGCGG
CGCGAGCTCT GGCAGATCGT GCAGCAGCTG GTCGGCGAGG AAAAGCTTTC GGTGATCGTG
AGCACCGCCT ACCTCGACGA GGCCGAGCGC TGCAGCCACG TGTTCGTGCT GCAGGAGGGC
CGGCTGATCG CAGAGGGCAC GCCGGACGAG ATCCGCGGCC ATGCCGAGGG CACCTGCTTC
GTCGCTGCGC CGCCCGAGGG CGAGGCGCCG CGCCTGATGC AGGCGCGCCT GCTCGATGCG
CGGCAGCAGA TCGTCGATGC CGTGCCGCAG GGCGGCGAAG TGCACTTCAT CCGCCGCCCG
GACGCGGACG ACGCGGCGCT CGAAAAGCTG CTGGCCGGCG CGCGCGCCGA ACCCGTGCCG
CCGCGGCTCG AGGACGGCTT CATGACACTG CTGCGCACGC GGCAGGCCAG CGACACGAAC
ATTGCCCCAT CGGCGGCGAG CGAAGGCCTT GCGCCGGCCG AGGGTGAACC CGGCGAAGTG
GTCATCGAGG TGAAGGACCT GGTGCGCCGC TTCGGCGACT TCGTGGCCGT GGCCAGCACC
AGCTTCTCGG TGCGGCGCGG CGAGATCTTC GGCCTGCTGG GGCCCAACGG CGCGGGCAAG
ACCACCACCT TCCGCATGCT CTGCGGCCTC CTGCCCGCAA GCGGCGGTCA GCTGCGCGTG
GCCGGCGTCG ACCTGCGCCA TGCGCGCGCG CAGGCGCGCC AGCGCATCGG CTATGTCTCG
CAGAAGTTCG CGCTCTACGG CAATCTCACG GTGCGCGAGA ACCTCTCGTT CTTCGGCGGC
GCCTACGGCC TGCGCGGGCA GAAGCTGCAG GGGCGCATGG ACACGGTGCT GCGGCAGTTC
GACCTCGAGC GCGAACTCGA CGCGCCCAGC GGGCAGCTGC CCGGCGGCTA CCGGCAGCGC
CTGGCCATGG CCACGGGCCT GCTGCACGAG CCCGAGATCC TGTTCCTCGA CGAGCCCACC
AGCGGCGCCG ATCCGCTCGC GCGGCGCGAG TTCTGGCGCC GCATCACGGC GCTGGCCGAA
GGCGGCACCA CCGTCGTCAT CACGACCCAC TTCATGGAAG AGGCCGAGTA CTGCGACCGC
ATCGTGATCC AGGACGCCGG CAAGGTGCTG GCCATCGGCA CGCCGCGCGA GGTGCGCGCG
CAGGCGCAGG ACGGCGCAGA CGGCGGAAGG CGCATCGACA TGGAGCAGGC CTTCATCGGC
ATCGTCGAGA AGGCGCGGCA GGAAGAAAGG AGACAGCCAT GA
|
|---|
| Protein sequence | MLRAEPAVSG RSLHKRFVAK GSKQVVRALD DVSLEVPAGT LTALVGPDGA GKTTLLRLMA
GLMRADEGEL RVLGIDVSAD PQAVQDRISY MPQRFGLYDD LSVQENLDLY ADLHGVSADK
RRERYARLME MTDLGRFTDR PAGKLSGGMK QKLGLACTLV RSPDLLLLDE PTVGVDPLSR
RELWQIVQQL VGEEKLSVIV STAYLDEAER CSHVFVLQEG RLIAEGTPDE IRGHAEGTCF
VAAPPEGEAP RLMQARLLDA RQQIVDAVPQ GGEVHFIRRP DADDAALEKL LAGARAEPVP
PRLEDGFMTL LRTRQASDTN IAPSAASEGL APAEGEPGEV VIEVKDLVRR FGDFVAVAST
SFSVRRGEIF GLLGPNGAGK TTTFRMLCGL LPASGGQLRV AGVDLRHARA QARQRIGYVS
QKFALYGNLT VRENLSFFGG AYGLRGQKLQ GRMDTVLRQF DLERELDAPS GQLPGGYRQR
LAMATGLLHE PEILFLDEPT SGADPLARRE FWRRITALAE GGTTVVITTH FMEEAEYCDR
IVIQDAGKVL AIGTPREVRA QAQDGADGGR RIDMEQAFIG IVEKARQEER RQP
|
|---|
| |