| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1724 |
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| Symbol | |
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| ID | 7974466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1855615 |
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| End bp | 1856592 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792323 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002943640 |
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| Protein GI | 239814730 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000146516 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTCC ACAAGACCCT GATCGCACTT GCCGTCGGCG CCGCAGCCGC GCTCACCACA
CTGGCTGCCA GCGCCACCGA GTTCCGCTCG GCAGACATCC ATCCCGACGA CTACCCGACC
GTGACCGCGG TCAAGTTCAT GGGCGAGCGG CTCAAGGCGC TCTCCGGCGG CAAGCACAGC
ATCAAGGTGT TCAACAACAG TTCGCTCGGC AGCGAGAAGG ACACCATCGA GCAGACCAAG
ATCGGCGCGC TGCAGATGGT GCGCGTGAAC ATCGCCCCGA TGAACAACAT CTGCGCCGAG
ACGCAGGTGC CGACCATGCC CTTCCTGTTC CGCTCGGTGG ACCACCTGCA CAAGGTGCTC
GACGGCCCGA TCGGCGAAGA GATCCTGAAG TCGTGCGAGA AGCAGGGCTT CGTCGGCCTC
GCCTACTACG ACAGCGGCGC GCGCTCGATG TTCACGGCCA AGAAGCCGGT GCGCAGCTTT
GCCGACATGA AGGGCCTGAA GGTGCGCGTG CAGCAGTCCG ACCTGTGGGT GTCGATGCTC
GAGGCCATGG GCGCCAACGC CACGCCGATG CCCATGGGCG AGGTCTACAC GGGCCTGAAG
ACCGGCCTGA TCGACGCCGC CGAAAACAAC TACCCGACCT ACGAAAGCGC CCGCGCCTTC
GAAGTGGCCA AGTACTACAG CAAGACCGAG CATTCGATGG CACCCGAGAT GCTGCTGTTC
TCCAAGCGCG CGTGGGACAA GCTCTCGGCC GAGGAGCAGG GCTGGATCCG CCAGGCCGCC
AAGGAATCGG TGCCCTACAT GCGCAAGCAG TGGGAAGAGC GCGAGATCAA GTCGCTCGCC
ACGGTGAAGG CCGGCGGCGC CGAGATCATC GAAGTCGACA AGGCCCCGTT CCAGGCCGCG
ATGAAGCCGG TGTATGACAA GTTCATCACG GACGCGAAGC TCAAGGACCT GGTCAAGCGC
GTGCAGGACA CGAAGTAG
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| Protein sequence | MKLHKTLIAL AVGAAAALTT LAASATEFRS ADIHPDDYPT VTAVKFMGER LKALSGGKHS
IKVFNNSSLG SEKDTIEQTK IGALQMVRVN IAPMNNICAE TQVPTMPFLF RSVDHLHKVL
DGPIGEEILK SCEKQGFVGL AYYDSGARSM FTAKKPVRSF ADMKGLKVRV QQSDLWVSML
EAMGANATPM PMGEVYTGLK TGLIDAAENN YPTYESARAF EVAKYYSKTE HSMAPEMLLF
SKRAWDKLSA EEQGWIRQAA KESVPYMRKQ WEEREIKSLA TVKAGGAEII EVDKAPFQAA
MKPVYDKFIT DAKLKDLVKR VQDTK
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