| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1716 |
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| Symbol | psd |
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| ID | 7974458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1847151 |
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| End bp | 1848002 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792315 |
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| Product | phosphatidylserine decarboxylase |
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| Protein accession | YP_002943632 |
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| Protein GI | 239814722 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0688] Phosphatidylserine decarboxylase |
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| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0895386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCGACC GCTCTGCCGT ACTGCCCCAA TACCTGTTCC CCAAGCAGGC CCTGACGAAC
TTCGCCGGCT GGGTCGCGGG CAAGGAACGC GGCGCCGTCA CCACCTGGAT CATCCGGCGC
TTCGTTGCCA AGTACGGTGT CGACATGGGC GAGGCGCTCG AATCCGACAT CAACCACTAC
AAGAGCTTCA ACCAGTTCTT CACGCGCGCG CTCAAGCCCG GCGTGCGGCC TCTTGCGCAG
GCCGACCTCG TGTGCCCGGT GGACGGCGCC ATCAGCCAGT TCGGCGCCAT CGAGGGCGAC
CAGATCTTCC AGGCCAAAGG CCACAACTAC AGCACCACCG CGCTGGTCGG CGGCGACGCG
GTGCTCGCGG CGCGCTTCGC GCATGGCAGC TTCGCCACGC TGTACCTGAG CCCGAAGGAC
TACCACCGCA TCCACATGCC CTGCGACGGG CGCCTGGTGC GCATGATCCA CGTGCCCGGC
GACCTGTTCT CGGTCAACCC GGTCACCGCG CGCGGCGTGC CCGGGCTGTT CGCGCGCAAC
GAGCGCGTGG TGTGCGTCTT CGAATCGGCG CACGGGCCCT TCGTGCTGGT GCTGGTGGGT
GCCACCATCG TCGGCAGCAT GGCGACCGTG TGGCACGGCG TGGTCAATCC GCCGCGCGGC
GGCGAGCTGC GCGAATGGCA CTACGCCGAC CAGCAGATCC TGCTCAAGCA GGGCGAGGAG
ATGGGCCGCT TCCTGCTCGG CTCCACCGTC GTCATGCTGT TCCCGCCGCC CCCGCTGGCC
TTCAACCCCG ACTGGGCGCC CACCCGGCCG GTCCGGCTGG GCGAGGCCAT GGCCAATCTC
GCGAATTTGT GA
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| Protein sequence | MSDRSAVLPQ YLFPKQALTN FAGWVAGKER GAVTTWIIRR FVAKYGVDMG EALESDINHY
KSFNQFFTRA LKPGVRPLAQ ADLVCPVDGA ISQFGAIEGD QIFQAKGHNY STTALVGGDA
VLAARFAHGS FATLYLSPKD YHRIHMPCDG RLVRMIHVPG DLFSVNPVTA RGVPGLFARN
ERVVCVFESA HGPFVLVLVG ATIVGSMATV WHGVVNPPRG GELREWHYAD QQILLKQGEE
MGRFLLGSTV VMLFPPPPLA FNPDWAPTRP VRLGEAMANL ANL
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