Gene Vapar_1707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1707 
Symbol 
ID7974449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1836070 
End bp1836510 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content67% 
IMG OID644792306 
Product3-dehydroquinate dehydratase 
Protein accessionYP_002943623 
Protein GI239814713 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0757] 3-dehydroquinate dehydratase II 
TIGRFAM ID[TIGR01088] 3-dehydroquinate dehydratase, type II 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0599881 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA TACTCGTCCT CAACGGCCCC AATCTCAACC TGCTCGGCAC CCGCGAGCCC 
GAGCAATACG GACGCGACAC GCTGGCCGAC GTCGAGCGCC TGTGCCAGGA GGCCGGCGCA 
AAGCACGGCG TGGAGATCGA ATGCCGCCAG TCGAACCACG AGGGCGTGCT GATCGACTGG 
ATCCACGAGG CCGGCCGCGA AGTGGCCGCG GGCCACATGC TGGGCGTGGT GATGAACCCG 
GGCGCCTACA CCCACACCTC GATCGCGCTG CACGACGCCA TCAAGGGCGC GAGCGTGCCG 
CTGATCGAGC TGCACATCTC GAACGTGCAC GCGCGCGAGG AATTCCGCCA CCACTCGTAC 
ATCTCGCCCG CGGCGCGCGG CATCATCGTG GGTCTTGGCG TGAAGGGCTA CGTGCTGGCC 
ATTGCGGCCC TGGTGCCCTG A
 
Protein sequence
MKKILVLNGP NLNLLGTREP EQYGRDTLAD VERLCQEAGA KHGVEIECRQ SNHEGVLIDW 
IHEAGREVAA GHMLGVVMNP GAYTHTSIAL HDAIKGASVP LIELHISNVH AREEFRHHSY 
ISPAARGIIV GLGVKGYVLA IAALVP