Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1660 |
Symbol | ligD |
ID | 7974728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1793621 |
End bp | 1796164 |
Gene Length | 2544 bp |
Protein Length | 847 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792259 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_002943576 |
Protein GI | 239814666 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.600549 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCGCG CAAACCCCCT GAAGCGCTAC AAGGAAAAGC GCAACTTCGG CGCCACCCCC GAGCCCGCGG AGGGCGGCGC ATCGGCGCCC GGCGTGCTGC AGTTCGTGGT GCAGAAGCAC TGGGCGACCC GGCTGCACTA CGACTTCCGC ATCGAGCTCG ATGGCGCCAT GAAGAGCTGG GCCGTGCCCA AGGGCCCGAG CTACGACACG CACGACAAGC GCATGGCCGT GCATGTGGAG GACCATCCCA TCGCCTACAA CCAGTTCGAG GGCGAGATAC CGCCCCGGCA ATACGGCGCG GGCAAGGTGA TCATCTGGGA CAAGGGCAGC TGGACGCCCA TCGGCGATCC GCGCAAGGGC TACAGGGCGG GGCGCCTCAA ATTCGAGCTG CACGGCTACA AGCTGCGCGG CAAGTGGACG CTGGTGCGCA TGCACGGCAA GGCCGACGAC AAGCAGGACG CGTGGCTCTT GATCAAGGAG CACGACGAGT ACGCCCGCCC GGCCGCGGAG TTCAGCGTGG TCGACCAGTT CCCGGACAGC GTGGCGCAGA TGCCGATGCC CGCTGCGGCG GTCTCGGCGC CCGCCGAGGC GCCGGCCGCA CCGGCCAGAA AGCGCGGCGG CAAGGCATCG GCCAGCGGCA TGCCCGCCGA TGCGGTGAAG GCCGCCATGC CGGCCAAGCT CTCGCCGCTG CTCGCCACGC TGGTCGACGG CCCGCCGCAC GATCCCCAGA ACTGGCTGTA CGAGATCAAG TTCGACGGCT ACCGCCTGCT CGCGCGCATC GATGCGAAGG GCGGCGTGCA GCTCGTCACG CGCAACGGCC ATGACTGGAG CAGCCGCATG CCGCACCTGG TGCGCGCGAT CGAGCGCATG AAGCTCGCGC CCGGCTGGCT CGATGGCGAG ATCGTGGTGC TCAACGAGTC CGGCGGCACG GACTTCCAGG CCCTGCAGAA CGCCTTCGAC AGCGAGAACA CGCGCAACAT CGTCTACTTC CTGTTCGACC TGCCGTACTA CGGCGGCTTC GATCTCACCG GCGTGCCGCT GGTCGAGCGG CGCGGCCTGC TGCAGGCGCT GCTGGCCAAG GCGCCGCCCG AAATCCGCTT CAGCGAGATC TTCGATGCGC CGCCCGAGGA CATCGTGGCT TCGGCCTGCA AGATCGGGCT CGAAGGCGTG ATCGGAAAGC GCAAGAACAG CACGTACGCC TCGCGCCGCT CGCCCGACTG GATCAAGCTC AAGTGCTCGC AGCGGCAGGA GTTCGTCATC GGCGGCTATA CCGATCCGAA GGGCTCGCGC GTGGGCATTG GCGCACTGCT GATCGGCGTG CACGACGACA AGGGCGACCT CATCTACGCC GGCGCGGTGG GCGCGGGCTT CAACGGCCGG ACGCTCGCCG ACATGCTCGA AAGATTGAAG CCGCTCGGCA TCGACAAGCG GCCGTTCAAG AACCCGACCG AGAACGACCG ACGCGCGCAC TGGGTCAAGC CGGTGCTGCT GGCCGAGGTC ACGTTTTCCG AATGGACGAA GGACGGCCAT GTGCGGCATC CGGTGTTCCA CAGCGTGCGC TCGGACAAGC CCGCGAAGGC CATCGTCCGC GAGAAGCCGG TGCACCCGGC GGGCGCCGGC CGCGAAGCGG AGGCTGAGCC CGAACCCGCC GCCACCATGC CCGCCAACTT CAAGGTCTCG CATGCCGACC GCGTGGTCGA TCCGTCGACC GGCATCACCA AGGTGGAGGT GGTGCGCTTC TACGGCCTGG TCGCGCCGCT GATGATGCCG CACCTGAAGG GCCGGCCCGT GTCGTTCGTG CGCGCGCCGC AGGGCATCGG CGGCCAGCTG TTCTTCCAGA AGCACCTGGA GCTGGGGCAG ATGGCCGGCG TGCGGCAGCT CGATGCGGCG CTGTGGCCCA AGCACCCCGA GCTGATCGAG ATCGCGGGGC CGCTCGGGCT GCTGAGTGCG GCGCAGATGA ACGTCGTCGA GTTCCATACC TGGAACGGCC TGAAGACGCT CATCGGCAAG CCCGACCGCA TGACCTTCGA CCTCGACCCG GGTGAGGGCG TCGGCTGGCC CATGGTGCTG CAGGCCGCCG AGCTGATGCG CGTGGTGCTC GACGAACTGG GCCTGGCGCC GTTCTGCAAG ACCAGCGGCG GCAAGGGGCT GCACGTGGTG GTGCCGCTCA AGCGGCAGTA CGACTGGGAC ACCATCAAGG ATTTCTCGCA GGCCATCGTG CGGCACATGG CGCGCACCCT GCCGCAGATG TTCGTCGCCA AGAGCGGGCC GGACAACCGC GTCGGCCGCA TCTTCATCGA CTACCTGCGC AACGGCTTCG GCGCGACCAC CATCTGCGCC TGGTCGGTGC GGGCGCGCCC CGGCATGGGG GTGTCGGTGC CGGTGGAATG GCAGGAGGTT CCCACGCTCA CGAGCGGTGC GCAGTGGACC CTGCGGAACA TCCATGCACG GCTCGACCGC GGCAACGATC CGTGGGCTGC GTATGCAAAG GCTGCAAAGA GTCCGGGAGC CGCAATGAAG CTGCTGGGCT TCAGAGTTCG ATGA
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Protein sequence | MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR IELDGAMKSW AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA GKVIIWDKGS WTPIGDPRKG YRAGRLKFEL HGYKLRGKWT LVRMHGKADD KQDAWLLIKE HDEYARPAAE FSVVDQFPDS VAQMPMPAAA VSAPAEAPAA PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH DPQNWLYEIK FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER RGLLQALLAK APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA SRRSPDWIKL KCSQRQEFVI GGYTDPKGSR VGIGALLIGV HDDKGDLIYA GAVGAGFNGR TLADMLERLK PLGIDKRPFK NPTENDRRAH WVKPVLLAEV TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG REAEAEPEPA ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA AQMNVVEFHT WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL DELGLAPFCK TSGGKGLHVV VPLKRQYDWD TIKDFSQAIV RHMARTLPQM FVAKSGPDNR VGRIFIDYLR NGFGATTICA WSVRARPGMG VSVPVEWQEV PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK LLGFRVR
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