Gene Vapar_1635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1635 
Symbol 
ID7974703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1767662 
End bp1769197 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content70% 
IMG OID644792235 
Productnitrogen metabolism transcriptional regulator, NtrC, Fis Family 
Protein accessionYP_002943552 
Protein GI239814642 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR01818] nitrogen regulation protein NR(I) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCGA TCTGGATAGT TGATGACGAC CAATCGATCC GCTTCGTGCT GGAGAAGGCC 
CTTTTGCGCG AAGACCTGCC CACGCGCAGC TTCACCAACG CGCGCGAGGT GCTGGCCGCC
CTCGAACTCG CCGACGACGA CGAACAGCAG GGCCCCCAGG TCCTGGTGAG CGACATCCGC
ATGCCCGGCG GCTCCGGGCT CGATCTGCTC GACAAGATCA AGGCCAAGCA CCCGGGCCTG
CCCGTCATCA TCATGACGGC GTTTTCCGAC CTCGACAGCG CCGTTTCGGC GTTCCAGGGC
GGTGCCTTCG AATACCTGCC CAAGCCCTTC GACCTGCCGC GCGCCGTCGA GCTGATCCGC
CGCGCCGTCG ACGAAAGCCA GCGCGAGGAA GTGGCCGAGG AGCGCATGGT CGCCGCGCCC
GAAATGCTGG GCCAGGCGCC CGCCATGCAG GACGTGTTCC GCGCCATCGG CCGGCTCTCG
CAGAGCAACG TCACGGTGCT CATCACGGGC GAATCGGGCT CGGGCAAGGA ACTGGTGGCG
CGCGCGCTGC ACAAGCATTC GCCGCGTGCC AACGGCCCCT TCGTGGCCAT CAACACCGCG
GCCATCCCCA AGGACCTGCT CGAGAGCGAG CTTTTCGGCC ACGAGCGCGG TGCCTTCACC
GGCGCGCAGA CCATGCGGCG CGGCCGCTTC GAGCAGGCCG AGGGCGGCAC GCTCTTTCTC
GACGAGATCG GCGACATGCC CTTCGACCTG CAGACGCGCC TGTTGCGCGT GCTGAGCGAC
GGGCACTTCT ACCGCGTGGG CGGCCACAAC TCGGTCAAGG CCAACGTGCG CGTGATCGCG
GCCACGCACC AGGACCTCGA GCAGCGCGTG AAGCTCGGCG GCTTCCGCGA AGACCTGTTC
CACCGCCTCA ACGTGATCCG CCTGCGCCTG CCGGCGCTGC GCGAGCGCGG CGAAGACGTG
CCGGCGCTCA CGCGCCACTT CCTGCAGGTG AGCGCGCGCC AGCTCGGCGT CGAGCCCAAG
CGCATTTCCG ATGCGGCGCT GGCCAAGCTG GCGTCGTTCA GCTTTCCGGG CAACGTGCGC
CAGCTCGAGA ACATCTGCCA CTGGCTGACC GTGATGGCAC CGGCCCAGCT GATCGAGGCC
AAGGACCTGC CGCCCGAAGT CATGGCCGCG GCGGCCGGTG CGCCGGTGCA AGCCGCGGAA
GGCACGGCCG CCACCGCGGT GCCCGCGCAA GCCGCACCGC TGCCGTCGCC CGGGCTCGAG
CGCGAAGCGG CACCGGCGGC GGGCGGCGCT GCACCCGAGG CCACTGAAGG TTTGGTGGGC
GCAAGCAGCT GGGAGAGCGG CCTGGAGATC GAAGCCCAGG CGCTGCTCGC GGCCGGGCGC
ACCGACGTCT GGGATGTGCT GTCGCGCCGT TTCGAGTCGC GGCTGATCCT CACGGCGCTG
GCCAACACCC GCGGCCGACG GATCGAAGCC GCTCAGAAGC TGGGCATCGG CCGCAACACC
ATCACCCGCA AGATCCAGGA ACTCGGGATC GAGTAG
 
Protein sequence
MKPIWIVDDD QSIRFVLEKA LLREDLPTRS FTNAREVLAA LELADDDEQQ GPQVLVSDIR 
MPGGSGLDLL DKIKAKHPGL PVIIMTAFSD LDSAVSAFQG GAFEYLPKPF DLPRAVELIR
RAVDESQREE VAEERMVAAP EMLGQAPAMQ DVFRAIGRLS QSNVTVLITG ESGSGKELVA
RALHKHSPRA NGPFVAINTA AIPKDLLESE LFGHERGAFT GAQTMRRGRF EQAEGGTLFL
DEIGDMPFDL QTRLLRVLSD GHFYRVGGHN SVKANVRVIA ATHQDLEQRV KLGGFREDLF
HRLNVIRLRL PALRERGEDV PALTRHFLQV SARQLGVEPK RISDAALAKL ASFSFPGNVR
QLENICHWLT VMAPAQLIEA KDLPPEVMAA AAGAPVQAAE GTAATAVPAQ AAPLPSPGLE
REAAPAAGGA APEATEGLVG ASSWESGLEI EAQALLAAGR TDVWDVLSRR FESRLILTAL
ANTRGRRIEA AQKLGIGRNT ITRKIQELGI E