Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1553 |
Symbol | |
ID | 7974782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1678323 |
End bp | 1679351 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792153 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_002943470 |
Protein GI | 239814560 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACCCA TGTCCCATCT CGCGCTCGCG CCCGGCGAGC CGCTGCTCGA GGTCGACAAC CTGCGCACCC ATTTCCATAC GCTGGCCGGC GTGGTGCGCT CGGTCGACGG CGTTTCGTAC ACCGTGCGCG CGGGGCGCAC GCTCGGCGTG GTCGGCGAAT CGGGCTGCGG CAAGAGCGTG ACCGCGCTTT CCATCCTGCG GCTGGTGCCC ACGCCACCCG GGCGCCACAT GGGCACGGTG CGGCTGCGCG GCACCGACCT GATGCAGCTC GGCGAACGCG AGATGCGGCA GATCCGCGGC AACCGCATCT CGATGATCTT CCAGGAGCCG ATGACCTCGC TGAACCCGGT GCTCACCGTG GGCCGGCAGA TCGCCGAGAC GGTGCAGCTG CACCAGAAGG CCAGCCGCGC CGACGCGCTG CAGCGCGCGG TGGAAATGCT GCGCGTGGTG CAGATCCCCG AGCCCGAGCG GCGCGTGAAC GAGTACCCGC ACCAGCTCTC TGGCGGCATG CGCCAGCGCG TGATGATCGC GCTGGCCCTG GCCTGCAACC CCGAGGTGCT GATTGCCGAC GAGCCCACCA CCGCGCTCGA CGTGACGATC CAGGCGCAGA TCCTCGACCT CATCAAGCGG CTGCAGAAGG AGCTGGGCAT GGGCGTGGTG ATGATCACGC ACGACCTCGG CGTGGTGGCC GAGAGCTGCG ACCGCGTGGT CGTGATGTAT GCCGGCAAGA AGGTCGAAGA AGCCGACGTG GTCGACCTGT TCGACCGGCC GCTGCACCCC TACACGCGCG CGCTGATGGC CTCGATGCCG TCGATGAACA CCGCGAGCCC GCGGCTGGCC GAGATCCCGG GGCTGGTGCC GGCCGCGCAC GAGCTGGGCC GCGGCTGCGC CTTTGCGGCG CGCTGCAGCC AGGCGCGCGA ACGCTGCCGC GCCGAGACGC CGCACCTCAC ACTGCAGGGC GGCGACCACG TGGTGGCCTG CTTCGCCGTC GAAGAACAAT GGGCCGATGC CGCCGAGGTG AGCGCATGA
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Protein sequence | MAPMSHLALA PGEPLLEVDN LRTHFHTLAG VVRSVDGVSY TVRAGRTLGV VGESGCGKSV TALSILRLVP TPPGRHMGTV RLRGTDLMQL GEREMRQIRG NRISMIFQEP MTSLNPVLTV GRQIAETVQL HQKASRADAL QRAVEMLRVV QIPEPERRVN EYPHQLSGGM RQRVMIALAL ACNPEVLIAD EPTTALDVTI QAQILDLIKR LQKELGMGVV MITHDLGVVA ESCDRVVVMY AGKKVEEADV VDLFDRPLHP YTRALMASMP SMNTASPRLA EIPGLVPAAH ELGRGCAFAA RCSQARERCR AETPHLTLQG GDHVVACFAV EEQWADAAEV SA
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