Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1528 |
Symbol | |
ID | 7973127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1645850 |
End bp | 1647223 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792127 |
Product | type II secretion system protein E |
Protein accession | YP_002943445 |
Protein GI | 239814535 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATTCA GAGAACAGCT CAATGCGATC GAAGCCGCGC CGGTCGCGCG CGCGCCGGCG CCACCTGTGA CCGACGGGGC ACTTTCATCC TTTGCTTCGG ACTCTTATAA GCTCCTGAAG GAGCGAATGC ACCTGAAGCT GCTGGACCGG TTCGACTTGG CGGTGCTCGA AACGCTGAAG CCCGAGGTGC TGCGCCAGGA GATTTCCACC ATGGTCGCGC GGCTGCTGCA AGAAGAGCCC GAGGCGCTGA ACGACATCGA GCGGCGCATG CTGATCCGCG ACATCCAGCA CGAGATGCTC GGCTTCGGCC CGATCGAGCT GCTGATGGCC GACCCGACGG TGTCGGACAT CCTGGTCAAC TCGCACGACC AGGTCTACGT GGAGCGCAGG GGCCGGCTGG AGCTGACGGA CGTGAGCTTC ACCGACGAGA AGCACCTGCT GCGCATCATC GACAAGATCG TCTCGCTGGT GGGGCGGCGC ATCGACGAAT CGAGCCCCAT GGTCGATGCG CGGCTGCCGG ACGGGTCGCG CGTCAATGCG GTGGTCGCGC CGGTGGCGCT GGACGGCCCG ATGATGTCGA TTCGCCGCTT CGCGAAGATC CCGCTGAAGA TGGAGAACCT GGTGAACGAC CTGAAGACGC TGACGCCTCA GATGGGGCTG ATGCTCGAAG GGCTGGCCAG CGCGAAGATC AACATGCTGA TCTCCGGCGG CACCGGCGCC GGCAAGACGA CGCTGCTGAA CATTCTCTCG GGCTTCATTC CCGCCACCGA ACGCATCATC ACCATAGAGG ACGCGGCCGA GCTCCAACTG CAGCAGCCGC ACGTGGCCCG CATGGAAACC CGGCCGATGA ACATCGAAGG CAAGGGCGAG ATCACGCAGC GCGCGCTGGT GCGCAATGCG TTGCGCATGC GGCCCGACCG CATCGTGATT GGCGAGGTGC GCGGTGCCGA GGCGGTCGAC ATGCTGCAGG CCATGAACAC CGGCCATGAA GGCTCGCTGA CCACCATCCA CGCCAACAGC CCGCGCGACG CGCTGGCGCG GCTGGAGAAC ATGATCAGCA TGGCCAACCT GAACCTGCCG CACCACTCGG TGCGCCAGCA GATCGCGTCG GCCATCACGG TGGTGATCCA GGTTCTGCGC ATGGTCGACG GGCGGCGCAA GGTCACCAGC ATCCAGGAGA TCACCGGCAT GGAAGGCGAG GTGGTCACGA TGCAGGAGAT CTTCGCGTTC CGCCAGACCG GCATGGGCCC CGACGGCCGG GTGCGCGGCT ACTTCCATGC CACCGGCGTG CGGCCGAAGT TCGTCGAGCG CCTGCACTCC TTCGGGGTGG TGCTGCCCGA CACCATGTTC GATCCCGACA AGCACTACGA ATAG
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Protein sequence | MSFREQLNAI EAAPVARAPA PPVTDGALSS FASDSYKLLK ERMHLKLLDR FDLAVLETLK PEVLRQEIST MVARLLQEEP EALNDIERRM LIRDIQHEML GFGPIELLMA DPTVSDILVN SHDQVYVERR GRLELTDVSF TDEKHLLRII DKIVSLVGRR IDESSPMVDA RLPDGSRVNA VVAPVALDGP MMSIRRFAKI PLKMENLVND LKTLTPQMGL MLEGLASAKI NMLISGGTGA GKTTLLNILS GFIPATERII TIEDAAELQL QQPHVARMET RPMNIEGKGE ITQRALVRNA LRMRPDRIVI GEVRGAEAVD MLQAMNTGHE GSLTTIHANS PRDALARLEN MISMANLNLP HHSVRQQIAS AITVVIQVLR MVDGRRKVTS IQEITGMEGE VVTMQEIFAF RQTGMGPDGR VRGYFHATGV RPKFVERLHS FGVVLPDTMF DPDKHYE
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