Gene Vapar_1510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1510 
Symbol 
ID7973108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1634277 
End bp1635053 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content72% 
IMG OID644792108 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002943427 
Protein GI239814517 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCAA ATTCACTGAC CGGCCGCCAT GCCCTCGTCA CCGGCGCCGC GCGCGGCATC 
GGCGCCGAGA TCGCCCGCAC CCTGGCTGCC GAGGGCGCAA CGCTCACGCT GCTGGGACGC
GACCTCGATT CACTCCGGCG CGTGGCCGCG ACGCTCGCGG GCCAGGGCCA CGGCGTGGCC
GCAGCGGACG TGGCCGACGC GCAGGCCGTG CAGTCGGCCT TCGCGCTGGC GCGTGCCGAG
CGCGGGCCGC TCGCCATCCT CGTCAACAAT GCGGGCGCAG CAGAGAGCGC GCCTTTTCTC
AAGACCTCGG CCGAGCTCTG GCAGCGCATG CTGTCGGTGA ACCTCACCGG CACGTTCCTG
TGCACGCAGG CCGCGCTGCC CGACATGCTC GAAGCCGGCT GGGGCCGCAT CGTCAACATC
GCCAGCACCG CGGGCCAGAA GGGCTATGCC TACGTCGCGG CCTATGCGGC GGCCAAGCAT
GGCGTGGTCG GGCTCACGCG CTCGCTCGCG CTCGAGGTGG CACGCAAGGG CGTCACGGTG
AACGCGGTGT GCCCCGGCTA CACCGACACC GACATCCTGC GCGCGAGCGT TGCCAACGTG
GTAGGCAAGA CCGGCCGCAG CGAAGCCGAT GCGCTGGCCG AGTTCTCCAG CGCCAATCCG
CAGCGGCGCA TCGTGCAGCC CGCCGAAGTG GCCGACGCGG TGCGGTGGCT CTGCGGGGAG
GGCGCCGCAT CCGTCACGGG GCAATCGGTC TCGGTGTCCG GCGGGGAGGT GATGTGA
 
Protein sequence
MHANSLTGRH ALVTGAARGI GAEIARTLAA EGATLTLLGR DLDSLRRVAA TLAGQGHGVA 
AADVADAQAV QSAFALARAE RGPLAILVNN AGAAESAPFL KTSAELWQRM LSVNLTGTFL
CTQAALPDML EAGWGRIVNI ASTAGQKGYA YVAAYAAAKH GVVGLTRSLA LEVARKGVTV
NAVCPGYTDT DILRASVANV VGKTGRSEAD ALAEFSSANP QRRIVQPAEV ADAVRWLCGE
GAASVTGQSV SVSGGEVM