| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1506 |
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| Symbol | |
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| ID | 7973104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1629268 |
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| End bp | 1631055 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792104 |
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| Product | ABC transporter related |
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| Protein accession | YP_002943423 |
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| Protein GI | 239814513 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.55626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGA ACTCCAAACG CATGGCATGG ATCGCGGCGG TGGTCGCCGT GCTGGCCCTG
GTGCCGGCGG TGGCGGGCAG CTTCACGGTC TCGCTGCTCA ACGACATCGG CATCGGTGCG
CTGGTGGCGC TCGGGCTGGT GCTGCTCACC GGCGTGGGCG GCGCGACCTC GTTCGGGCAG
GCGGCCTTCG TAGGCATCGC GGCCTACGCC ACGGCCTGGC TCACCACCAC GCAGGGCTTG
TCGCCATGGA TCGGGCTCTT GTTCGCGCTG CTGCTCACGG GCCTATCGGC GCTGGCCATC
GGCATGCTCA CGCTGCGGCT GGGCGGGCAC TTCCTGCCGC TCAGCACCAT CGCCTGGGGC
CTGTCGATCG CGATGCTGTT CGGCAATGTC GATGCGCTCG GGCGCCACAC GGGCCTGTCG
AACATTCCGG CGCTGCGCAT CGCGGGCTGG TCGCTGGCCG ATCCGCGTTC GATGTACTAC
CTGATCTGGG TGGTGGTCGG GCTGGCCTGC CTGTTCAGCC ACAACCTGCT GCAGTCGCGG
CCGGGGCGCG CGATTCGGGG CTTGCGCGGC GGTGCCACGC TGCTCGCGAG CGTGGGGGCC
GACGCCTACC GCGTGCGGCT CACGCTGTTC GTCACGGCCG CGCTCTTCGC GGGGCTGGCG
GGCTGGCTCT ATGCGCACAT GAACCGCTTC GTGAGCCCGT CGCCCTTCGA CGTGCGCGCG
AGCATCGAGT ACCTGCTGAT GGCGGTGGCC GGCGGGCTCG GGCAGCTGGC CGGCGCGCTG
GTAGGCGCCG CGCTGGTGCT GGTGCTCAAG AACGGCCTGC AGGACGTGCT GCCGATGCTC
ACGCAGCGCG CGGGCCAGCT GGAGGCCGTG GCCTTTGCGA CGCTCTTCAT CCTGCTGCTG
CACTTCGCGC GCGGCGGCCT CATGGGCCTG CTGCGGCGCT GGGCGCGCCG CCGCGCCGGC
ACGCAAGCTG CCTCGCGCCA CGAGGCGCCC GCGGTCGATC CGCTGCCGCA CCGTCAGCTG
CCCGCGCGCG GCACGCAGGT GTTGTCGGTG AAAGGCGTGG TCAAGCGCTT TGGCGGGCTG
GTGGCGGTCA ACGACGTGAG CTTCGAAGTG AACGCGGGCG AGATCGTGGG CCTGATCGGG
CCCAACGGCG CGGGCAAGTC GACCATGTTC AACCTGCTGA CCTGCACGCT GCCGATGAGC
GCGGGCCAGG TGCGCTTTCT CGACCACGAC ATCGCCGGCA TGCCGCAGCG GCAGGTGGCG
CGGCTGGGCT TGGCGCGCAC CTTCCAGCAC GTGAAGCTCA GGCCGCACAT GAGCCTCTTG
GACAACGTGG CGCTGGGCGC GCATTCGCGC ACGCGCTCGG GCATCCTGAA GGCGGGCCTG
CGGCTGGACC GCAAGGAAGA GATGCAGATC CTGCAGGAGG CGCAGCGCCA GCTCGACCGC
ATCGGCCTGG GCGACCGCGC GCACGAGCTC GCGGGCAGCC TGCCACTGGG CACTCAGCGC
ATCCTGGAGA TTGCGCGTGC GCTGGCCGCC GACCCGGTGC TGCTGGTGCT CGATGAGCCC
GCGGCGGGCC TGCGCCGCAA GGAAAAGATG GCGCTCGGCG ATCTGCTGCG CAAGCTGCGC
GAGGAGGGTG TGACCATCCT CATCGTCGAG CACGACATGG ACTTCGTGAT GAAACTGGTG
GACCGTCTGG TGGTGATGAA CTTCGGCTCC AAGCTCGTGG AGGGCGTGCC GTCGGCGGTG
CGCGCCGACG AGCGCGTGCA GGCGGCTTAC CTGGGGAGCG TGGTATGA
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| Protein sequence | MSANSKRMAW IAAVVAVLAL VPAVAGSFTV SLLNDIGIGA LVALGLVLLT GVGGATSFGQ
AAFVGIAAYA TAWLTTTQGL SPWIGLLFAL LLTGLSALAI GMLTLRLGGH FLPLSTIAWG
LSIAMLFGNV DALGRHTGLS NIPALRIAGW SLADPRSMYY LIWVVVGLAC LFSHNLLQSR
PGRAIRGLRG GATLLASVGA DAYRVRLTLF VTAALFAGLA GWLYAHMNRF VSPSPFDVRA
SIEYLLMAVA GGLGQLAGAL VGAALVLVLK NGLQDVLPML TQRAGQLEAV AFATLFILLL
HFARGGLMGL LRRWARRRAG TQAASRHEAP AVDPLPHRQL PARGTQVLSV KGVVKRFGGL
VAVNDVSFEV NAGEIVGLIG PNGAGKSTMF NLLTCTLPMS AGQVRFLDHD IAGMPQRQVA
RLGLARTFQH VKLRPHMSLL DNVALGAHSR TRSGILKAGL RLDRKEEMQI LQEAQRQLDR
IGLGDRAHEL AGSLPLGTQR ILEIARALAA DPVLLVLDEP AAGLRRKEKM ALGDLLRKLR
EEGVTILIVE HDMDFVMKLV DRLVVMNFGS KLVEGVPSAV RADERVQAAY LGSVV
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