| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1504 |
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| Symbol | |
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| ID | 7973102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1627009 |
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| End bp | 1628172 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792102 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002943421 |
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| Protein GI | 239814511 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.235771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGCC TGATGCTGAC CTTGACGCGC GGTGCCCTCG CCGCGGCGCT GACCGCCTGT
GGTGTTGCGA GCGCATTCGC GGCCGACCTC AAGGTCGGCC TGAGCGTGTC GTTGTCGGGG
CCCAACTCCT CGCTGGGCGT GCCCTATGCC AAGGGCATGC AGGCCGCGCT GGCCTACAAG
CCGGAAGTCA ACGGCCGCAA GGTGCAGCTC ATCGTGCTGG ACGACGGCTC CGACCCCACC
ACGGCCGGGC GCAATGCACG CAAGCTGATC GAGGAGGACA AGGTCGATGT GCTGATGGGC
ACCTCGGGCG TGCCGGCCGC CATTGCCATG GCGCAGGTCG GCAAGGAAGC CAAGGTGCCG
ATGATCGGCC TCACGCCCAT CCTGCTCGAT GCGGCCGAGA ACCCCTGGGT CATGACGGTG
GCGCAGCCCA CGCAGCTGAT GATCGATGCG GTGGTCGAGC GCATGAAGCG CAACAACGTC
AAGACCGTGG GCTACATCGG CTTCACCGAT GCCTGGGGCG ACCTGGTCTA CAACGCGCTG
ATGAAGGCCG CACCCGAGGC CGGCATCAAG GTGGTGAGCA ACGAGCGCTA TGCGCGCGCC
GATACCTCGG TGACCGGACA GGTGCTGAAG ATCGTCGCGC TCAGGCCCGA CGCGGTGATG
ACCGGCGGCG CCGGCACGCC GGGCGCTCTG CCCTTTCTTG CGCTGCAGGA GCGCGGCTAC
AAGGGCGGCG TGTACGGCCA GCACGGGCTG ATCAACCCCG ACTTCGTGCG CGTGGTCGGT
GCCTCGGGCC AGAACGCGCT GATGCCCACC GGCCCGGTGA TCGTGGCCGA GCAGCTGCCC
GACAGCCACC CGACCAAGAA GATCGCAACC GATTTCCGCG CCGTGTTCCA GAAGGTCAAC
AGCGCGCCCA CCAGCGATGC GTTCTCGGCC TATTCCTTCG ACGGCTGGCT GGTGTTTGCC
GATGCCGCTT CGCGCGCCAT GAAGAAGGCG GAGCCGGGCA CGGCAGAGTT CCGCGTCGCG
CTGCGCGATG CCATCTTCAG CACCAAGGAA GTGGTGGGCA CGCACGGCGT CTACAGTTTC
AAGCCCGGCA GCCTCTACGG CGTGGACGAA CGCGCCCGCG TGATCGTCAA GCTCGACAAC
GGCCAATGGA AGCTCGCACC TTGA
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| Protein sequence | MKSLMLTLTR GALAAALTAC GVASAFAADL KVGLSVSLSG PNSSLGVPYA KGMQAALAYK
PEVNGRKVQL IVLDDGSDPT TAGRNARKLI EEDKVDVLMG TSGVPAAIAM AQVGKEAKVP
MIGLTPILLD AAENPWVMTV AQPTQLMIDA VVERMKRNNV KTVGYIGFTD AWGDLVYNAL
MKAAPEAGIK VVSNERYARA DTSVTGQVLK IVALRPDAVM TGGAGTPGAL PFLALQERGY
KGGVYGQHGL INPDFVRVVG ASGQNALMPT GPVIVAEQLP DSHPTKKIAT DFRAVFQKVN
SAPTSDAFSA YSFDGWLVFA DAASRAMKKA EPGTAEFRVA LRDAIFSTKE VVGTHGVYSF
KPGSLYGVDE RARVIVKLDN GQWKLAP
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