| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1500 |
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| Symbol | |
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| ID | 7973098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1622509 |
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| End bp | 1623675 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792098 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002943417 |
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| Protein GI | 239814507 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.145866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCC TGAACCGATT CCGTGCCGTC GCGGGCATTG CCGCGGCCTT TGGCGCGTTG
AGCGCCGCGG GCGCGTGGGC GGCCGATCTC AAGGTCGGCT TCATCACGTC GCTGTCGGGG
CCGGTGTCGT CGCTCGGCAT TCCCTACGAG AAGGGCATGA AGGCCGCCAT CGCCTACAAG
GCCGACATCG GCGGCCGCAA GATCCAGCTG GTGCAGCTCG ACGATGCGTC CGACCCCTCC
ACGGCCGCGC GCAACGCCCG CAAGATGATC GACGAGGACA AGGTCGACGT GATCATCGGC
ACGGCCGGGT CGCCCGGCGC GCTGGCCATT GCCGGCGTGG CGCGCGAGAC GAAGACGCCG
CTGATCTCGA TCGCCAACGC CAACCTGCCG GGCGAGGAGG GCGCCTGGAT GGTGACGCTG
CCGCAGCCCG CACCGCTGAT GGTGAGCGCG GTGGTCGAGC GCATGAAGAA ATCGGGCGTG
AAGACGGTCG GCTACATCGG CTTTTCCGAC GCCTGGGGCG ACCTGGTGTA CGACGCGCTG
CAAAAGAGCG CGGAACCCGC GGGCATCAAG ATCGTCTCGA ACGAGCGCTA TGCGCGCGCC
GATTCGTCGG TGACCGGCCA GGTGCTCAAG ATCGTCGCAT TGCGGCCCGA CGCGGTGATC
ACCGGCACCT CGGGCACGCC CGGCGCGCTG CCCTACCTGG CGCTCGCGGA GCGCGGCTAC
AAGGGCCAGA TCTACGGCAT GCACGCGCTC ATCAACCCGG ACTTCGTGCG CGTGGGCGGT
GCCTCGGTCG AAGGCCTGCT GGCGCCCACG GGCCCGGTGA TCGTGGCCGA GCAGCTGCCG
AGCGAAAACC CGATCCGCAA GGTGTCGATG GATTTCCGCG CGGCCTACCA GAAGGCCAAC
GGCGCGCCGC CGACCGATGC CTTCTCGGCC TACACCTTCG ACGCCTGGCT GCTGTACCTC
GATGCGGCCC AGCGCGCGCT CGCCACCAAG GCCGAGCCCG GCACGCCGCA GTTCCGCCTG
GCGCTGCGCG ACGCCATCGT GAGCACCAAG GAGCTGGTGG GCACGCACTC GGTCTACAAC
TTCAAGCCGA CGGACCGCTA TGGCTCCGAT GAACGGTCGC GTGTTGTCGT GAAGCTGGAG
AAGGGGCAGT GGAAGCTGGT TCCTTGA
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| Protein sequence | MKVLNRFRAV AGIAAAFGAL SAAGAWAADL KVGFITSLSG PVSSLGIPYE KGMKAAIAYK
ADIGGRKIQL VQLDDASDPS TAARNARKMI DEDKVDVIIG TAGSPGALAI AGVARETKTP
LISIANANLP GEEGAWMVTL PQPAPLMVSA VVERMKKSGV KTVGYIGFSD AWGDLVYDAL
QKSAEPAGIK IVSNERYARA DSSVTGQVLK IVALRPDAVI TGTSGTPGAL PYLALAERGY
KGQIYGMHAL INPDFVRVGG ASVEGLLAPT GPVIVAEQLP SENPIRKVSM DFRAAYQKAN
GAPPTDAFSA YTFDAWLLYL DAAQRALATK AEPGTPQFRL ALRDAIVSTK ELVGTHSVYN
FKPTDRYGSD ERSRVVVKLE KGQWKLVP
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