Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1483 |
Symbol | |
ID | 7973081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1602792 |
End bp | 1603388 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644792081 |
Product | oligoribonuclease |
Protein accession | YP_002943400 |
Protein GI | 239814490 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0135513 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGAAT CCCTTGACCC CACGACCGTC GCAACCCTCC CCGTCCTCAA GAAAAGCGAC CAGAACCTGG TCTGGCTCGA CTGCGAAATG AGCGGCCTCG ACCCCGAGAA GGAGCGCCTG CTCGAGATTG CCGTGGTCGT CACCGGCCCC GACCTCACGC CCCGCATCGA CGGCCCCGTG CTGGTCATCC ACCAGAGCGA CGCGGTGCTC GACGCCATGG ACGCCTGGAA CAAGGGCACG CACGGGCGCA GCGGCCTGAT CGACAAGGTG AAGGCCTCGA CGCTGGACGA AGCCGCGGCC GAGCAGCAAC TGCTGGAATT CGTGGCCCGC TATGTTCCCA GGAGCGGTTC GCCCATGTGC GGCAACACCA TCGGGCAGGA CCGGCGCTTC CTGGTCAAGT TCATGCCCAA GCTGGAGGCG TACTTCCACT ACCGCAACCT CGATGTCAGC ACCCTGAAGG AGCTGGCCAA GCGTTGGAAG CCCTCCGCCT ACAGCGCCTT CAAGAAGCAG CAGGCGCACA CTGCGCTGGC CGACGTGCAC GAGTCCATCG AGGAGCTCGC GCACTACAGG GAAACCTTTC TCAAATTGAC GGATTAG
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Protein sequence | MSESLDPTTV ATLPVLKKSD QNLVWLDCEM SGLDPEKERL LEIAVVVTGP DLTPRIDGPV LVIHQSDAVL DAMDAWNKGT HGRSGLIDKV KASTLDEAAA EQQLLEFVAR YVPRSGSPMC GNTIGQDRRF LVKFMPKLEA YFHYRNLDVS TLKELAKRWK PSAYSAFKKQ QAHTALADVH ESIEELAHYR ETFLKLTD
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