Gene Vapar_1474 details

Gene Information

• Locus tag: Vapar_1474
• Symbol: rimM
• ID: 7973072
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1595301
• End bp: 1595855
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644792072
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002943391
• Protein GI: 239814481
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGCCCG CACTCGAAGC CGCCGAATTG CCGGCGGATG CGATCGAGGT AGGACGCATC 
GCCGATGCAT GGGGCATCAA GGGCTGGTTC AAGGTCCTGC CCCACAGCGC CCAGCCCGAG 
GCGCTTTTTT CTTCCAAGCG CTGGTTCCTG CAGGCTCCCG GAGCCTCGGC AACCGCAGCT 
TTCCGGCTCG CGATCCGCGA AGCCAAGGAA CATTCCGACT GCATCGTCGC CTCCTCCGAG 
GATGTGCCTG ACCGCAACGC GGCCGAGGCG CTTCGCGGCG CGCGCGTGTT CGTGCCGCGC 
TCGAGCTTTC CCACGGCCGG CGACGACGAG TACTACTGGG TCGACCTGAT CGGCCTTCCG 
GTGGTCAACC GCGAAGGCGT GGCGCTCGGC ACGGTGCGCG AGCTGCTCGC CACCGGCCCG 
CAGACCACGC TGGTGCTCGC GGCCGAGGAA GACGGCAAGG CCATCGAACG CATGGTGCCC 
TTCGTCTCGG TCTTCGTCGA CAAGGTCGAC CTCGCCGGCC GCCTCATCAC GGTCGACTGG 
CAGCCCGATT TCTGA 

 

Protein sequence

MLPALEAAEL PADAIEVGRI ADAWGIKGWF KVLPHSAQPE ALFSSKRWFL QAPGASATAA 
FRLAIREAKE HSDCIVASSE DVPDRNAAEA LRGARVFVPR SSFPTAGDDE YYWVDLIGLP 
VVNREGVALG TVRELLATGP QTTLVLAAEE DGKAIERMVP FVSVFVDKVD LAGRLITVDW 
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