Gene Vapar_1441 details

Gene Information

• Locus tag: Vapar_1441
• ID: 7971269
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1567181
• End bp: 1567633
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644792039
• Product: phosphodiesterase, MJ0936 family
• Protein accession: YP_002943358
• Protein GI: 239814448
• COG category: [R] General function prediction only
• COG ID: [COG0622] Predicted phosphoesterase
• TIGRFAM ID: [TIGR00040] phosphoesterase, MJ0936 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0531917
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATCCGCG TCGGCCTCAT CTCCGACACC CACGGCCTGC TGCGCCCGGA GGCCGTGGCG 
GCGCTGCAGG GCAGCGACTT CATCGTGCAT GGCGGGGACA TCGGCGATGC CGGCATCCTC 
GAGGCGCTCG CCGCCATCGC GCCGCTGACC GTGGTGCGCG GCAATAACGA CCGCGCGCCG 
TGGGCCGGCC GCATTCCGGA AACGGCCTTG CTGCAGGTGG GCAGCGTGCT CGTGCATGCG 
GTGCACGACC TGTCGCAGCT CGCCGCCGCC CCCGCCGGCG TCCGCGTGGT GGTCTCTGGC 
CACTCCCACA AGCCGAAGAT CGAGGAGCGC GGGGGCGTGC TCTACGTCAA CCCGGGCAGC 
GCCGGCCCGC GACGATTCAA ATTGCCAATT GCCGTGGCCG AACTCATTGT CGATGGCGAT 
GCCGTGTCGG CGCGCATCCT CGAACTGGGC TGA 

 

Protein sequence

MIRVGLISDT HGLLRPEAVA ALQGSDFIVH GGDIGDAGIL EALAAIAPLT VVRGNNDRAP 
WAGRIPETAL LQVGSVLVHA VHDLSQLAAA PAGVRVVVSG HSHKPKIEER GGVLYVNPGS 
AGPRRFKLPI AVAELIVDGD AVSARILELG