| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1432 |
|---|
| Symbol | |
|---|
| ID | 7971260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1554379 |
|---|
| End bp | 1555365 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792030 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_002943349 |
|---|
| Protein GI | 239814439 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01759] malate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA AACCCGTCCG CGTTGCCGTC ACCGGTGCCG CCGGCCAAAT CGGTTACGCC
CTGTTGTTCC GTATCGCGTC CGGCGAAATG CTCGGCAAGG ACCAGCCGGT CATCCTGCAA
CTGCTTGAGA TCCCCGACGA GAAGGCCCAG AAGGCGCTCA AGGGCGTGAT GATGGAGCTC
GACGACTGCG CCTTCCCGCT CTTGGCCGGC ATGGAAGCCC ATGGCGACCC GATGACCGCC
TTCAAGGATG CCGACTACGC CCTCCTGGTG GGTTCGCGTC CGCGCGGCCC GGGCATGGAG
CGTGCCGAGC TGCTGGCCGT CAACGGCGCC ATCTTCACGG CGCAGGGCAA GGCGCTCAAC
GCCGTCGCCA GCCGCAACGT CAAGGTGCTG GTGGTCGGCA ACCCCGCCAA CACCAACGCC
TACATCGCGA TGAAGAGCGC CCCCGACCTG CCGCGCAAGA ACTTCACCGC CATGCTGCGC
CTGGACCACA ACCGCGCCGC CAGCCAGATC GCCGCCAAGA CCGGCAAGGC CGTGGCCGAC
ATCGAAAAGC TCGTCGTCTG GGGCAACCAC TCGCCCACGA TGTACGCCGA CTACCGCTTT
GCCACCATCA AGGGCGAAAG CGTCGCCAAG ATGATCAACG ACCAGGAATG GAACGCCAAC
ACCTTCCTGC CGACCGTTGG CAAGCGCGGC GCCGCCATCA TCGAGGCCCG CGGCCTGTCG
TCGGCTGCCT CGGCCGCCAA CGCCGCCATC GACCACATGC GCGACTGGGC CCTGGGCACC
AACGGCAAGT GGGTCACCAT GGGCATCCCG TCGGACGGCC AGTACGGCAT TCCGAAGGAC
ACGATGTTCG GCTTCCCGGT CACCTGCGAG AACGGCGAGT ACAAGCTGGT CGAAGGCCTG
GAAATCGACG CCTTCAGCCA GGAACGCATC AACAAGACGC TCGAAGAACT GCAAGGCGAA
CAGGCCGGCG TTGCGCACCT GATCTAA
|
|---|
| Protein sequence | MSKKPVRVAV TGAAGQIGYA LLFRIASGEM LGKDQPVILQ LLEIPDEKAQ KALKGVMMEL
DDCAFPLLAG MEAHGDPMTA FKDADYALLV GSRPRGPGME RAELLAVNGA IFTAQGKALN
AVASRNVKVL VVGNPANTNA YIAMKSAPDL PRKNFTAMLR LDHNRAASQI AAKTGKAVAD
IEKLVVWGNH SPTMYADYRF ATIKGESVAK MINDQEWNAN TFLPTVGKRG AAIIEARGLS
SAASAANAAI DHMRDWALGT NGKWVTMGIP SDGQYGIPKD TMFGFPVTCE NGEYKLVEGL
EIDAFSQERI NKTLEELQGE QAGVAHLI
|
|---|
| |