Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1422 |
Symbol | |
ID | 7971250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1545280 |
End bp | 1546701 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792020 |
Product | isopropylmalate isomerase large subunit |
Protein accession | YP_002943339 |
Protein GI | 239814429 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACGCA CGCTCTACGA CAAGATCTGG GACGAACACG TCGTCCACAC CGAGGAAGAC GGCACCGCGA TCCTCTACAT CGACCGCCAC CTGGTGCACG AAGTCACCAG CCCGCAGGCC TTCGAGGGCC TGCGCGAGGC CGGCCGCAAG CTGTGGCGCA TCAGCTCGGT GGTGGCCACG GCCGACCACA ACACGCCCAC CACGGGCTGG GAGCGCGGCT ACGAAGGCAT TGCCGATCCG ACCAGCAAGG AGCAGGTCAC CACGCTCGAC AAGAACATCG CGGAATTCGG CGCCGCCGCG TTCTTTCCAT TCCTGAGCAA GCGCCAGGGC ATCGTGCACG TGATCGGCCC TGAATCGGGC GCCACGCTGC CGGGCATGAC GGTGGTCTGC GGCGACTCGC ACACCTCCAC CCACGGCGCC TTCGGTGCGC TCGCGCACGG CATCGGCACC AGCGAGGTCG AGCACGTCAT GGCCACGCAG ACGCTGCTCG GCAAGAAGGC GAAGAACATG CTCGTGAAGG TCGAGGGCAA GCTGCCTTTC GGCTGCACCG CCAAGGACAT CGTGCTGGCC ATCATCGGCA AGATCGGCAC GGCCGGCGGC ACGGGCTACA CGATCGAATT CGCAGGCTCG GCCATCCGCG ACCTGAGCAT GGAAGGCCGC ATGACGGTCT GCAACATGGC CATCGAGGCC GGTGCGCGCG CCGGCCTCGT GGCGGTCGAC GAAAAGACCA TCGGCTACAT CAAGGGCCGG CCGCTCGCGC CCACCGGTGT GGAGTGGGAC CAGGCCGTGG CCTACTGGCG CACGCTGCAG TCCGACCCCG ACGCCGCGTT CGACGCCGTG GTCGAGCTCG ACGCCACGCA GATCCAGCCG CAGGTCACCT GGGGCACCTC GCCCGAGATG GTGGTCGATA TCAACGGCCG CGTGCCCGAT CCCGACAAGG AAAAGGACGC CAGCAAGCGC AGCGCCATCG AGCGCGCGCT GGTCTACATG GGCCTGGAGC CGAACAAGGC GATGAACGAC ATCTTCATCG ACAAGGTGTT CATCGGCTCG TGCACCAACA GCCGCATCGA GGACATGCGC GAAGCCGCCG CCGTGGTGAA GAAGCTCGGC CAGAAGGTGG CCAAGAACGT CAAGCTCGCG ATGGTGGTGC CCGGCTCGGG CGTGGTGAAG GAACAGGCCG AGCGCGAAGG GCTCGATGTG ATCTTCAAGG CCGCGGGATT CGAATGGCGC GAACCCGGCT GCTCGATGTG CCTGGCGATG AACGCCGACC GCCTGGAGCC CGGCGAGCGC TGCGCCTCCA CCAGCAACCG CAACTTCGAG GGCCGCCAGG GCGCCGGCGG CCGCACCCAC CTCGTGAGCC CGGCCATGGC CGCCGCCGCC GCGGTGCACG GCCACTTCGT CGACGTGCGC ACCTTCGCCT GA
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Protein sequence | MARTLYDKIW DEHVVHTEED GTAILYIDRH LVHEVTSPQA FEGLREAGRK LWRISSVVAT ADHNTPTTGW ERGYEGIADP TSKEQVTTLD KNIAEFGAAA FFPFLSKRQG IVHVIGPESG ATLPGMTVVC GDSHTSTHGA FGALAHGIGT SEVEHVMATQ TLLGKKAKNM LVKVEGKLPF GCTAKDIVLA IIGKIGTAGG TGYTIEFAGS AIRDLSMEGR MTVCNMAIEA GARAGLVAVD EKTIGYIKGR PLAPTGVEWD QAVAYWRTLQ SDPDAAFDAV VELDATQIQP QVTWGTSPEM VVDINGRVPD PDKEKDASKR SAIERALVYM GLEPNKAMND IFIDKVFIGS CTNSRIEDMR EAAAVVKKLG QKVAKNVKLA MVVPGSGVVK EQAEREGLDV IFKAAGFEWR EPGCSMCLAM NADRLEPGER CASTSNRNFE GRQGAGGRTH LVSPAMAAAA AVHGHFVDVR TFA
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