| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1397 |
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| Symbol | |
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| ID | 7971225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1518695 |
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| End bp | 1519765 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791995 |
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| Product | putative sigma E regulatory protein, MucB/RseB |
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| Protein accession | YP_002943314 |
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| Protein GI | 239814404 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3026] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTTC AGATGCCGAT CTCCGCACGC GCGTTCGCGC TGGTGTTCGC TGCTTTTTGT
TTTGCGCAGA TCGCGGCCGC GCAGACCCGG CCCGGACTGG CGAACGCCAA GGGGACGGCC
TCGGCCCAGG CGGGCGATGC GCCGCCCCCG ATGAGCGTCG TCGAATGGCT GCAGCGCATG
CACACCGGGG CGCGGCAGCG CAATTACATC GGCACCTTCG TGGTGTCGGC CGCGGGCGGC
GACCTGTCGA GCGCGCGCAT CTGGCATGTG CGCGACGGCG ACCTGCAGAT CGAGCGCATC
GAGGCGCTGT CGGGGCCGCC GCGCTCCACG TTCAGGCGCA ACCACCATGT GATGACCTTC
CTGCCCGAGG CGAAGGTCGT GAAGGTCGAG AAGCGCGAGA ACCTCGACCT GTTCCCCAAT
CTGCCCGACA AGCCCGATTC GTCGATCGGC GATTTCTACG ACGTTCGCGC CGTCGGCAAG
GACCGCGTGG CGGGCTTCGA TGCCGACGTG GTGCAGCTGG TGCCGCACGA CGGACTGCGC
TTCGGCTACC GCATCTGGAG CGAACGCCGC TCCGGCCTCG TGGTCAAGCT GCAGACCGTG
GACGCCGAAT CCCGCGTGGT GGAGCAATCG GCGTTTTCCG AATTGCAGCT CGACGCACCG
ATCAAGGCGC AGGCGCTCGC GCAGATGATG AGCAACACCA GCGGCTACCG CGTCGAAAAG
CTGGAGCTCG AACGCACCAG CGCGCAGGAC GAAGGCTGGG TGCTCAAGGC CCCGGTGGCC
GGCTTCAAGC CGCGCAGCTT CTACCGGCGT CCGGCCGGCA GCGACAGCAA GGCGGGGCAG
GACCGCACCG TCCAGTGGAC ATTCTCCGAT GGCCTGGCCT CGGTGTCGCT TTTCATCGAG
CGTTACGATG AAAAGCGTGC GCCGCGCGAC GGCGTGCTGA CGATCGGGGC CACCAACGCG
ATTCGCCGGC GATTGCCCGA GCCGGCGAGC GACTGGTGGC TGACCGCGGT GGGCGAGGTG
CCGCAGCAGA CGCTCAATGC GTTCGCTCAA AGCCTGGCGC GCACGCGCTG A
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| Protein sequence | MTVQMPISAR AFALVFAAFC FAQIAAAQTR PGLANAKGTA SAQAGDAPPP MSVVEWLQRM
HTGARQRNYI GTFVVSAAGG DLSSARIWHV RDGDLQIERI EALSGPPRST FRRNHHVMTF
LPEAKVVKVE KRENLDLFPN LPDKPDSSIG DFYDVRAVGK DRVAGFDADV VQLVPHDGLR
FGYRIWSERR SGLVVKLQTV DAESRVVEQS AFSELQLDAP IKAQALAQMM SNTSGYRVEK
LELERTSAQD EGWVLKAPVA GFKPRSFYRR PAGSDSKAGQ DRTVQWTFSD GLASVSLFIE
RYDEKRAPRD GVLTIGATNA IRRRLPEPAS DWWLTAVGEV PQQTLNAFAQ SLARTR
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