| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1378 |
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| Symbol | |
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| ID | 7973059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1500738 |
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| End bp | 1503962 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791976 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_002943295 |
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| Protein GI | 239814385 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.282937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGGA TGCTGATCAA TGCCACGCAG GCCGAAGAAC GCCGCCTGGC CATCGTCGAC
GGGCAAAAGC TCCTCGACTA CGAAATCGAG ATCGAAGGGC GCGAACAGCG CAAGGGCAAC
ATCTACAAGG CCGTCGTGAC GCGCGTCGAG CCTTCGCTCG AAGCCTGTTT CGTCGACTAC
GGCGAAGACC GCCACGGCTT CCTGCCGTTC AAGGAAATCT CCAAGCAATA TTTCGCCGAA
GGCGTTTCCG CCAACCAGGC GCGCATCCAG GACGTCATCA AGGAAGGCCA GGAACTGGTC
GTCCAGGTCG AGAAGGAAGA ACGCGGCAAC AAGGGCGCGG CCCTCACCAC CTTCATCTCG
CTGGCCGGCC GCTACGTGGT GCTGATGCCC AACAACCCGC GCGGCGGCGG CGTGAGCCGG
CGCATCGAGG GCGACGACCG CGCCGAACTC AAGGAGGCGA TGGACCAGCT CGAGTACCCC
AAGGGCATGA GCATCATCGC GCGCACCGCC GGCATCGGCC GCTCGGCGCC CGAACTCCAG
TGGGACCTGA ACTACCTGCT CAAGCTCTGG AGCGCCATCG ACGGCGCGGC CAAGGGCGGC
AAGGGCGCCT TCCTGATCTA CCAGGAATCC TCGCTCGTCA TCCGCGCGAT CCGTGACTAC
TTCAATCACG ACATCGGCGA CATCCTGATC GACACCGACG ACATCTACGA GCAGGCGCAG
CAGTTCATGG CGCACGTCAT GCCCGAGCAT GCCGCCCGCG TGAAGCGCTA CCGCGACGAC
GCGGCGCTGT TCAGCCGCTT CCAGATCGAG CACCAGATCG AATCGGCCTA TGCGCGCACC
GTGCAGCTGC CCTCGGGCGG CGCCATCGTG ATCGACCACA CCGAGGCGCT GGTCTCGGTC
GACGTGAACT CGGCCCGCGC CATCAAGGGC GGCGACATCG AGGAAACCGC CACCCGCACC
AACCTCGAAG CCGCCGACGA AGTGGCCCGC CAGATGCGCC TGCGCGACCT GGGCGGCCTG
ATCGTCATCG ACTTCATCGA CATGGACGAG TCGAAGAACC GCCGCGAAGT CGAAAGCCGC
CTGCGCGACG CGCTGCGCCA AGACCGCGCC CGCGTGCAGT TCGGCTCGAT CAGCAAGTTC
GGCCTGATGG AAATGAGCCG CCAGCGCCTG AAGCCGGCGC TCAGCGAAGG CTCGTCGATC
CCCTGCCCGC GCTGCGGCGG CTCGGGCCAC ATCCGCGACA CCGAATCGAG CGCGCTGCAG
ATCCTGCGCA TCATCCAGGA AGAGTGCCTG AAGGACAACA CGGCCGCCGT GCACGTGCAG
GTGCCGGTCG AGGTGGCCTC GTTCCTGCTG AACGAAAAGC GCCCCGAGAT CGCCAAGATC
GAGCTCAAGC AGCGCGTCAC CGTGCTGATG GTGCCCAACA AGACGCTCGA AACGCCGAAC
TACAAGCTCG AGCGCCTGAA GCACGACGAT CCGCGCCTGG ACCACATCGA AGCCAGCTAC
AAGATGGCCG ACGAGATCGA GGACCCGACC TCGGTCACGC GCCGCTCGCA GGAGCCCACC
AACAAGCAGA CGCCGGTCAT CAAGGGCGTG CTGCCCGATG CGCCCGCGCC CGTGGTGCCG
CCCCGGCCCG AACCGGTGCG TGCGCCGGCC GCCGTGGCCC CGGCACCGGT CGCGCCACCC
GTCGCGAGCG CACCGGCGCC GGCCGAGACC GGCTTCTTCG CCCGCATCAA GAGCTGGTTC
GGCGGCACGC CGGCACCGGC ACCCGCACCG GCCGTGATCC CGGTCGAGCC GCCGAAGCCC
ACGCGCCGTG ACGGCGGCCG CCCGGGCCGC GACGGCGAAG CGCGCGGCGC CCGCGATGGC
GAACAGCGCC GCGGTGGCCG CGGCGGCGAA GGCCGCGGTG AAAACGGCAA CCGCTCCGGT
GGCCGCGACG GCGAACGCCG CGGCGGCCGC AGTGGCGAGC GCCGCGAAGG CCGCGGCGGC
GAAATTCGCA GCGAAGCCGC CCAGCCGCGC GAGCAACGCG AGCCCCGTGA ACAACGCGAG
CCGCGCGAGC TCCGCGAACC TCGCGAGCCC CGTGAAGCAC GCGGCCCGCG CGACGGCGAA
CAGCGCCGCG GTGGCCGCGG CGAGCGCCGC GAAGGCGAAG GCCGCGAGGC ACGGCCGGCA
TCGGCCGAGC CGATCGACGG CAACCTCGAA GCCCAGCAAC TGGCATCGGG CGCACCCGCC
GGCGATGAAG GCAATGCGCC GGCAGAACGC GCGCCCCGCG GCCGCGGCGA ACGCCGGGAC
CGTGGCGAAC GCGGTGAACG GACCGAACGC GGCGAGCGCA ATGGCACCGA TGCACCGCGC
GATGCCTCCG GCGGCGACAA CGTGGCCGCG CAGGACGGCA CGCAGGCCGA ACGCACCCCG
CGCGGTGGCC GCGAAGAGCG CGCGCCGCGA GGCGAGCGCA GCGATGGCCG CCGCGAGCGC
CGCAGCGAAG GCCAGCCGCG TTTCGCCAAC GGCGAAGCGG CACCGGCCAA TCTCGACGAA
GCCGACATCC GCATCGCCGA GGCCGCCGAA ATGGCACCCG CCAATGAAGG CGAAGCCAGC
AGCGGCGAGC AGCAGGCACC GCGCCGCGAA GGCGAAGAGC GCCGCGGCCG TTCGCGCGAC
CGCTACGGCC GCGACCGCCG CGAGCGCGGT CCGCGCGACG ACAGCGAAGC CAGCGTGGCC
GGCGCATCGG CCGACAACGC CGAGGCGGGC GAAGCACCGG CACGCCAGCA GCCCCAGCCG
CCGGCAACGG CCGAACGCGC CGCAGTGCGC GAAGAAGAAG CACGCGAACC GGCACCACGG
AGCTACTTCG ATCGCCCGGC CGCAGCCGCT CCCGCAGCTC CCGCAGCCAC GGTCGCTGCA
GTCGCGGCGG CGCCTGTCGC CGTCGAGAGC AGCAGCAGCA AGCCCGCGGC TGCAGCCAAC
GGCCGTGCAC TTCCGAAGGT GCAACCCTTC GAGCTGCCGC TGAGCGAACT CGCGCAGATC
GCCGAGAGCT CGGGCCTGCA GTGGGTGAAC TCGGATGCCG AGCGCATTGC ACAGGCCCGC
GCAGCGATCG CGGCCGAGCC GAAGCCGGTG CACGTGCCGC GCGAGCGCCC GCCTGCGATC
GTGCTCGACG ACGGTCCGCT GGTGCTGGTT GAAACCCGCC GCGAACTCGG CGCGATGACG
CTGCCGTTCG AAAAGGCACC TTCCGATGCG CAAGGCGTGA ACTGA
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| Protein sequence | MKRMLINATQ AEERRLAIVD GQKLLDYEIE IEGREQRKGN IYKAVVTRVE PSLEACFVDY
GEDRHGFLPF KEISKQYFAE GVSANQARIQ DVIKEGQELV VQVEKEERGN KGAALTTFIS
LAGRYVVLMP NNPRGGGVSR RIEGDDRAEL KEAMDQLEYP KGMSIIARTA GIGRSAPELQ
WDLNYLLKLW SAIDGAAKGG KGAFLIYQES SLVIRAIRDY FNHDIGDILI DTDDIYEQAQ
QFMAHVMPEH AARVKRYRDD AALFSRFQIE HQIESAYART VQLPSGGAIV IDHTEALVSV
DVNSARAIKG GDIEETATRT NLEAADEVAR QMRLRDLGGL IVIDFIDMDE SKNRREVESR
LRDALRQDRA RVQFGSISKF GLMEMSRQRL KPALSEGSSI PCPRCGGSGH IRDTESSALQ
ILRIIQEECL KDNTAAVHVQ VPVEVASFLL NEKRPEIAKI ELKQRVTVLM VPNKTLETPN
YKLERLKHDD PRLDHIEASY KMADEIEDPT SVTRRSQEPT NKQTPVIKGV LPDAPAPVVP
PRPEPVRAPA AVAPAPVAPP VASAPAPAET GFFARIKSWF GGTPAPAPAP AVIPVEPPKP
TRRDGGRPGR DGEARGARDG EQRRGGRGGE GRGENGNRSG GRDGERRGGR SGERREGRGG
EIRSEAAQPR EQREPREQRE PRELREPREP REARGPRDGE QRRGGRGERR EGEGREARPA
SAEPIDGNLE AQQLASGAPA GDEGNAPAER APRGRGERRD RGERGERTER GERNGTDAPR
DASGGDNVAA QDGTQAERTP RGGREERAPR GERSDGRRER RSEGQPRFAN GEAAPANLDE
ADIRIAEAAE MAPANEGEAS SGEQQAPRRE GEERRGRSRD RYGRDRRERG PRDDSEASVA
GASADNAEAG EAPARQQPQP PATAERAAVR EEEAREPAPR SYFDRPAAAA PAAPAATVAA
VAAAPVAVES SSSKPAAAAN GRALPKVQPF ELPLSELAQI AESSGLQWVN SDAERIAQAR
AAIAAEPKPV HVPRERPPAI VLDDGPLVLV ETRRELGAMT LPFEKAPSDA QGVN
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