Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1343 |
Symbol | |
ID | 7973024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1459616 |
End bp | 1461859 |
Gene Length | 2244 bp |
Protein Length | 747 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644791941 |
Product | penicillin-binding protein 1C |
Protein accession | YP_002943260 |
Protein GI | 239814350 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00458316 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACCGCC CGCCCTTCCC CGCCAGCCGC AGCCGCCTTG CCGCAGCGCT GGCGGCCATC GCCTGCGCGC TGCCGGTTGC TGCCGGCGCC GTGAGCTTCG ACGAGGTGAA GCGCGAGTTC CGCCCTTCCG ACACCGCGGT GCTCGACCGC AACGGCGAGC TGCTGCAGCG CGTGCGCACC GATGCCAGCG TGCGGCGCGG CCAGTGGGTG GCGCTGGCCG ATGTTTCGCC CGCGCTGCGC ATGGCCATGG TGCTGAGCGA AGACCGGCGC TTCTACGAGC ACAGCGGCAT CGACTGGCGC GCGGTGTCGT CCGCCGCCTG GGGCAACCTG TGGAACACCC GCACGCGCGG CGCATCGACC ATCACGATGC AGCTGTCGGG CCTGCTCGAC GAAGACCTGC GCCGCGCCAA CAGCGGGCGC AGCTTCACGC AGAAGATCGG CCAGACCGTG GCAGCCGCGC AGCTGGAGCG CAGCTGGCGC AAGGATCAGA TCCTGGAGGC CTACCTCAAC ACCGTGCCCT TCCGCGGCGA GATCGTGGGC ATCGACGCGC TCTCGCGCAC GCTGTTCGGC AAGGCGCCCA GCGGCCTGGA CGCGCGCGAG GCCAGCGTGG CCGCGGCACT GGTGCGCGCG CCCAACGCCA AGCCCGCATT GGTGGCGCAG CGTGCCTGCG AGGTGATGCG CGCGATGGAG CCGGGGCAGA AGATCGATTG CGATGCGCTC GACATGTTCA CGAGCGCGGC GGTGCAGCGG CGGGCCTTCG ATGCGACCGA AGGCATTGCA CCGCATGCGG CGCGGCGCGT TCTGAAGGAA CTGCGCGAGG CCGGCGAAAC GGCCGCGCCG CCCTCGCGCC AAGCAGCAGC AGCAGCCGGC AAGGAGGCCG CCGTGCGGAC CACGCTGCGT GCGCCGCTGC AGCGCTTTGC GCTGGCCACG CTGCAGCGCC ACCTGAAGGA ATTGCGCGGC CGCCACGTGG AAGACGGCGC GCTCGTGGTG CTGGACAACG CGAGCGGCGA GGTGCTTGCC TGGGTCGGCT CCTCGGGCCC GCTGAGCCAG GCGGCCGAGG TCGATGCGGT CACCGCGCTG CGCCAGCCCG GCTCCACGCT CAAGCCGCTG CTCTATGCGC AGGCCATCGC CGAGCGGCGG CTCACGGCGG CTTCGCTGAT CGACGATTCG TCGGCGCAGA TCAGCACCGC GAGCGGGCTC TACATTCCGC AGAACTACGA CCGCCAGTTC AAGGGGCCGG TGTCGGCGCG CACCGCGCTG GCCGCCTCGC TCAACGTGCC GGCCGTGCGC ACGCTGGTGA TGGTGTCGCC CGAATCGTTC GCGCGCCAGC TGCGCGCGGC CGGCCTGCCG CTGCGCGAAA GCGGCGACTA CTACGGCTAC AGCCTGGCGC TCGGCAGCGC CGAGGTGTCG CTGCTGTCGC TCGCCAACGC CTATCGCATG CTGGCCAATG GCGGGCGCTA CGGGCCGCCC ACCCTGATGG CGCGGCCTCC CGTGCCGGCG CCGGCTGCGC CCGTCCTCGA TCCGCGCGCG GCCTTCATCG TCGGCGACAT CCTGTCGGAC GCGAACGCAC GCACGCGCAC CTTCGGGCTC GACAGCATTC TTTCCACGCG CTTCTGGACC GCCGTGAAAA CGGGCACCAG CAAGGACATG CGCGACAACT GGGCCGTGGG CTGGTCGCAG CGCTACACGG TCGGCGTGTG GGTCGGCAAC GCGAGCGGTG CGTCGATGTG GGACGTGAGC GGCACCAGCG GCGCGGCCCC GGTGTGGGCC GAGGTGATGC GCTTCCTGCA CGCGCGCGAG CCGAGCCGCG CGCTCCGGCC GCCGGCCGGC CTGGTCGAGG CGCAGGTGGC GTTCGGCCCC GGCGCCGACG GCAATCCGCT CGAGGCGGCG CGCAGCGAAT GGTTCCTGCA GGGCACGGAG CAGCCGCTCT TCGCGCTCGA CAGCGCCGGC ACAGCGGCAG GCGCCGGGGC CGCGCCGCGC ATTACCGCGC CGGCCGACGG CACCATCATC GCGCTGGACC CCGACATTCC GCCGCTGCAC CAGCGCGTGC GCTTCGAGTC CGAAGGCCGC GGCGTGCAAT GGCGCATCGA CGGCAAGCTG TTTGCGCGCG GCAACAGCGC GCAGTGGCTG CCGTGGCCCG GGCGCCACGT GATCGAACTC GCCGATGCCA CCGGCAAGGT GGTCGACCAG CGCAAGCTCG AAGTGCGCGG CGCGGGCGTG GTCGCGAAAA GCGCGCGCCG GTAG
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Protein sequence | MHRPPFPASR SRLAAALAAI ACALPVAAGA VSFDEVKREF RPSDTAVLDR NGELLQRVRT DASVRRGQWV ALADVSPALR MAMVLSEDRR FYEHSGIDWR AVSSAAWGNL WNTRTRGAST ITMQLSGLLD EDLRRANSGR SFTQKIGQTV AAAQLERSWR KDQILEAYLN TVPFRGEIVG IDALSRTLFG KAPSGLDARE ASVAAALVRA PNAKPALVAQ RACEVMRAME PGQKIDCDAL DMFTSAAVQR RAFDATEGIA PHAARRVLKE LREAGETAAP PSRQAAAAAG KEAAVRTTLR APLQRFALAT LQRHLKELRG RHVEDGALVV LDNASGEVLA WVGSSGPLSQ AAEVDAVTAL RQPGSTLKPL LYAQAIAERR LTAASLIDDS SAQISTASGL YIPQNYDRQF KGPVSARTAL AASLNVPAVR TLVMVSPESF ARQLRAAGLP LRESGDYYGY SLALGSAEVS LLSLANAYRM LANGGRYGPP TLMARPPVPA PAAPVLDPRA AFIVGDILSD ANARTRTFGL DSILSTRFWT AVKTGTSKDM RDNWAVGWSQ RYTVGVWVGN ASGASMWDVS GTSGAAPVWA EVMRFLHARE PSRALRPPAG LVEAQVAFGP GADGNPLEAA RSEWFLQGTE QPLFALDSAG TAAGAGAAPR ITAPADGTII ALDPDIPPLH QRVRFESEGR GVQWRIDGKL FARGNSAQWL PWPGRHVIEL ADATGKVVDQ RKLEVRGAGV VAKSARR
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