Gene Vapar_1343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1343 
Symbol 
ID7973024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1459616 
End bp1461859 
Gene Length2244 bp 
Protein Length747 aa 
Translation table11 
GC content73% 
IMG OID644791941 
Productpenicillin-binding protein 1C 
Protein accessionYP_002943260 
Protein GI239814350 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00458316 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACCGCC CGCCCTTCCC CGCCAGCCGC AGCCGCCTTG CCGCAGCGCT GGCGGCCATC 
GCCTGCGCGC TGCCGGTTGC TGCCGGCGCC GTGAGCTTCG ACGAGGTGAA GCGCGAGTTC
CGCCCTTCCG ACACCGCGGT GCTCGACCGC AACGGCGAGC TGCTGCAGCG CGTGCGCACC
GATGCCAGCG TGCGGCGCGG CCAGTGGGTG GCGCTGGCCG ATGTTTCGCC CGCGCTGCGC
ATGGCCATGG TGCTGAGCGA AGACCGGCGC TTCTACGAGC ACAGCGGCAT CGACTGGCGC
GCGGTGTCGT CCGCCGCCTG GGGCAACCTG TGGAACACCC GCACGCGCGG CGCATCGACC
ATCACGATGC AGCTGTCGGG CCTGCTCGAC GAAGACCTGC GCCGCGCCAA CAGCGGGCGC
AGCTTCACGC AGAAGATCGG CCAGACCGTG GCAGCCGCGC AGCTGGAGCG CAGCTGGCGC
AAGGATCAGA TCCTGGAGGC CTACCTCAAC ACCGTGCCCT TCCGCGGCGA GATCGTGGGC
ATCGACGCGC TCTCGCGCAC GCTGTTCGGC AAGGCGCCCA GCGGCCTGGA CGCGCGCGAG
GCCAGCGTGG CCGCGGCACT GGTGCGCGCG CCCAACGCCA AGCCCGCATT GGTGGCGCAG
CGTGCCTGCG AGGTGATGCG CGCGATGGAG CCGGGGCAGA AGATCGATTG CGATGCGCTC
GACATGTTCA CGAGCGCGGC GGTGCAGCGG CGGGCCTTCG ATGCGACCGA AGGCATTGCA
CCGCATGCGG CGCGGCGCGT TCTGAAGGAA CTGCGCGAGG CCGGCGAAAC GGCCGCGCCG
CCCTCGCGCC AAGCAGCAGC AGCAGCCGGC AAGGAGGCCG CCGTGCGGAC CACGCTGCGT
GCGCCGCTGC AGCGCTTTGC GCTGGCCACG CTGCAGCGCC ACCTGAAGGA ATTGCGCGGC
CGCCACGTGG AAGACGGCGC GCTCGTGGTG CTGGACAACG CGAGCGGCGA GGTGCTTGCC
TGGGTCGGCT CCTCGGGCCC GCTGAGCCAG GCGGCCGAGG TCGATGCGGT CACCGCGCTG
CGCCAGCCCG GCTCCACGCT CAAGCCGCTG CTCTATGCGC AGGCCATCGC CGAGCGGCGG
CTCACGGCGG CTTCGCTGAT CGACGATTCG TCGGCGCAGA TCAGCACCGC GAGCGGGCTC
TACATTCCGC AGAACTACGA CCGCCAGTTC AAGGGGCCGG TGTCGGCGCG CACCGCGCTG
GCCGCCTCGC TCAACGTGCC GGCCGTGCGC ACGCTGGTGA TGGTGTCGCC CGAATCGTTC
GCGCGCCAGC TGCGCGCGGC CGGCCTGCCG CTGCGCGAAA GCGGCGACTA CTACGGCTAC
AGCCTGGCGC TCGGCAGCGC CGAGGTGTCG CTGCTGTCGC TCGCCAACGC CTATCGCATG
CTGGCCAATG GCGGGCGCTA CGGGCCGCCC ACCCTGATGG CGCGGCCTCC CGTGCCGGCG
CCGGCTGCGC CCGTCCTCGA TCCGCGCGCG GCCTTCATCG TCGGCGACAT CCTGTCGGAC
GCGAACGCAC GCACGCGCAC CTTCGGGCTC GACAGCATTC TTTCCACGCG CTTCTGGACC
GCCGTGAAAA CGGGCACCAG CAAGGACATG CGCGACAACT GGGCCGTGGG CTGGTCGCAG
CGCTACACGG TCGGCGTGTG GGTCGGCAAC GCGAGCGGTG CGTCGATGTG GGACGTGAGC
GGCACCAGCG GCGCGGCCCC GGTGTGGGCC GAGGTGATGC GCTTCCTGCA CGCGCGCGAG
CCGAGCCGCG CGCTCCGGCC GCCGGCCGGC CTGGTCGAGG CGCAGGTGGC GTTCGGCCCC
GGCGCCGACG GCAATCCGCT CGAGGCGGCG CGCAGCGAAT GGTTCCTGCA GGGCACGGAG
CAGCCGCTCT TCGCGCTCGA CAGCGCCGGC ACAGCGGCAG GCGCCGGGGC CGCGCCGCGC
ATTACCGCGC CGGCCGACGG CACCATCATC GCGCTGGACC CCGACATTCC GCCGCTGCAC
CAGCGCGTGC GCTTCGAGTC CGAAGGCCGC GGCGTGCAAT GGCGCATCGA CGGCAAGCTG
TTTGCGCGCG GCAACAGCGC GCAGTGGCTG CCGTGGCCCG GGCGCCACGT GATCGAACTC
GCCGATGCCA CCGGCAAGGT GGTCGACCAG CGCAAGCTCG AAGTGCGCGG CGCGGGCGTG
GTCGCGAAAA GCGCGCGCCG GTAG
 
Protein sequence
MHRPPFPASR SRLAAALAAI ACALPVAAGA VSFDEVKREF RPSDTAVLDR NGELLQRVRT 
DASVRRGQWV ALADVSPALR MAMVLSEDRR FYEHSGIDWR AVSSAAWGNL WNTRTRGAST
ITMQLSGLLD EDLRRANSGR SFTQKIGQTV AAAQLERSWR KDQILEAYLN TVPFRGEIVG
IDALSRTLFG KAPSGLDARE ASVAAALVRA PNAKPALVAQ RACEVMRAME PGQKIDCDAL
DMFTSAAVQR RAFDATEGIA PHAARRVLKE LREAGETAAP PSRQAAAAAG KEAAVRTTLR
APLQRFALAT LQRHLKELRG RHVEDGALVV LDNASGEVLA WVGSSGPLSQ AAEVDAVTAL
RQPGSTLKPL LYAQAIAERR LTAASLIDDS SAQISTASGL YIPQNYDRQF KGPVSARTAL
AASLNVPAVR TLVMVSPESF ARQLRAAGLP LRESGDYYGY SLALGSAEVS LLSLANAYRM
LANGGRYGPP TLMARPPVPA PAAPVLDPRA AFIVGDILSD ANARTRTFGL DSILSTRFWT
AVKTGTSKDM RDNWAVGWSQ RYTVGVWVGN ASGASMWDVS GTSGAAPVWA EVMRFLHARE
PSRALRPPAG LVEAQVAFGP GADGNPLEAA RSEWFLQGTE QPLFALDSAG TAAGAGAAPR
ITAPADGTII ALDPDIPPLH QRVRFESEGR GVQWRIDGKL FARGNSAQWL PWPGRHVIEL
ADATGKVVDQ RKLEVRGAGV VAKSARR