| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1251 |
|---|
| Symbol | |
|---|
| ID | 7973175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1363663 |
|---|
| End bp | 1365174 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644791848 |
|---|
| Product | protein of unknown function DUF112 transmembrane |
|---|
| Protein accession | YP_002943168 |
|---|
| Protein GI | 239814258 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGT TTGAACACCT CTCGATGGGT TTTGGCGTTG CCTTTACCTT CACCAACCTG
CTGTACTGCC TGGTCGGCTG CATCCTGGGC ACCCTGATCG GCGTGCTGCC GGGCATCGGC
CCGGTCGCGA CCATCGCGAT GCTGCTGCCC GCCACCTACG CGCTGCCGCC CGTGTCGGCG
CTGATCATGC TGGCCGGCAT CTACTACGGT GCGCAGTACG GCGGCTCGAC CACCGCCATC
CTGGTGAACC TGCCGGGCGA ATCTTCGTCG GTGGTGACCG TGATCGACGG CTACCAGATG
GCGCGCAAGG GCCGTGCGGG TCCGGCGCTG GCCGCGGCGG GCCTGGGCTC GTTCTTCGCG
GGCTGCGTCG GCACGCTGAT CCTCGCGGCC TTCGCGCCGC CGCTGACCGA GCTGGCCTTC
AAGTTCGGCC CGGCCGAGTA CTTCTCGCTG ATGATCCTGG GCCTGATCGG CGCCGTGGTG
CTGGCTTCGG GCTCGCTGCT CAAGGCCATC GCGATGATCG TGCTGGGCCT CTTGCTGGGC
CTTGTCGGCA CCGACGTGAA TTCGGGCGTG GCGCGCTACA GCTTCGACGT TCCGGAACTG
ACCGACGGCA TCGGCTTCGT GGCCATTGCC ATGGGTGTGT TCGGCTACGG CGAAATCATT
GCCAACCTTT CGCGTCCCGA CGACGAGCGC GAAGTGTTCA CCGCCAAGGT CTCGGGCCTG
TTCCCGACCA AGGAAGACTT CAAGCGGATG ATTCCCGCGG TGCTGCGCGG CACGGCGCTG
GGCTCTTCGC TCGGCATCCT GCCCGGCGGC GGTGCGTTGC TGTCGGCTTT CGCGGCCTAC
ACCATCGAGA AGAAGACCAA GCTGCATCCC GGCGAAGTGC CGTTCGGCAA GGGCAACATC
CGCGGCGTGG CAGCTCCCGA GGCGGCCAAC AACGCCGGTG CGCAGACCTC CTTCATCCCG
CTGCTCACGC TGGGCATTCC GCCCAACGCG GTGATGGCGC TGATGGTGGG CGCAATGACG
ATCCACAACA TCCAGCCCGG CCCGCAGGTG ATGACCAGCA ACCCCGAGCT GTTCTGGGGC
CTGATCGCCT CGATGTGGCT TGGCAACGCG ATGCTGATCA TCCTGAACCT GCCGCTCATC
GGCATGTGGA TCAAGCTGCT GTCGGTGCCC TACAAGTTCC TGTTCCCGGC GATCGTGCTG
TTCTGCGCCA TCGGCGTGTA CTCCACGAAC AACAACACCT GGGACATCTG GATGGTCGGC
ATCTTCGGCT TCGTGGGCTA CACCTTCTTC AAGCTGGGTT GCGAGCCTGC GCCGTTGCTG
CTGGGCTTCA TCCTCGGGCC GATGATGGAA GAAAACCTGC GCCGCTCGCT GCTGCTGTCG
CGCGGCGACT GGAGCGTGTT CGTCACGCGT CCGATCTCGC TCGGCCTGCT GCTTGCCGCT
TTGCTGCTGC TCGTGATCGT GCTGCTGCCG GCGGTCAAGG CGAAGCGCGA AGAAGCCTTC
GTCGAGGATT AA
|
|---|
| Protein sequence | MELFEHLSMG FGVAFTFTNL LYCLVGCILG TLIGVLPGIG PVATIAMLLP ATYALPPVSA
LIMLAGIYYG AQYGGSTTAI LVNLPGESSS VVTVIDGYQM ARKGRAGPAL AAAGLGSFFA
GCVGTLILAA FAPPLTELAF KFGPAEYFSL MILGLIGAVV LASGSLLKAI AMIVLGLLLG
LVGTDVNSGV ARYSFDVPEL TDGIGFVAIA MGVFGYGEII ANLSRPDDER EVFTAKVSGL
FPTKEDFKRM IPAVLRGTAL GSSLGILPGG GALLSAFAAY TIEKKTKLHP GEVPFGKGNI
RGVAAPEAAN NAGAQTSFIP LLTLGIPPNA VMALMVGAMT IHNIQPGPQV MTSNPELFWG
LIASMWLGNA MLIILNLPLI GMWIKLLSVP YKFLFPAIVL FCAIGVYSTN NNTWDIWMVG
IFGFVGYTFF KLGCEPAPLL LGFILGPMME ENLRRSLLLS RGDWSVFVTR PISLGLLLAA
LLLLVIVLLP AVKAKREEAF VED
|
|---|
| |