| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1223 |
|---|
| Symbol | |
|---|
| ID | 7973147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1336771 |
|---|
| End bp | 1337574 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791820 |
|---|
| Product | Abortive infection protein |
|---|
| Protein accession | YP_002943140 |
|---|
| Protein GI | 239814230 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCTC CTAAAAGCAC GGCCTTTCCC TCTGCCACGC AGGCCGCGCT GCTGTTCCTT
GCGGTGTTTC TCTGCGAATT CGCGATCGGC GCTGCGCTGC GCGATGCCAA TCGCTGGCTC
GGCCTGAACG GCATGCAGCT CGGCGTGCTG TCGGCGGTGC TGGGCAACGG CTGCGTGTTC
GCCGTGGTGA TGCACCAGCA GAAGCTCAGC TACCGCGAAC TCTTCCACCA GTCGCCGGCT
TCCGCCCGCG CCACCCTGAT GCTGGTCGTG CCGCCCGTGC TGCTGCTCGT GCCGGGGCTG
ATGGTGGTGA TGGCCGCCGT GCTCAACCTG CTGATTCTCA TCGCGCCGCT TTCCGCCTGG
GAGGAGTCGA TGTTCAGCCG CATGGCCGAC GGCAGCGTCG CGGCCACGCT GGCCGTGTGC
CTGATGGCGC CGCTGCTCGA GGAAATGCTG TTCCGCGGCA TCGTGCTGCG CGGGTTCTTG
CTGCGCTATT CGCGCTGGCA GGCCATCGTG GGCTCGGCGC TGCTCTTTGG CGCCGCGCAC
CTGAACATCT ACCAGTTCGT CGTGGGCCTG GTGATGGGCA CCGTGCTCGG ATGGCTCTAT
GAGCGCAGCC GCTCGCTCAT CCCGTGCATC GCGCTGCACG CGGCCTACAA CAGCGGCACC
ATCTTCATCG GCGACTGGCC GGATGGCAGC TCGACGGCGG ACACGGCGTG GGCCTTGCTG
CTCGTCTTTA TCGCGGGCCT GTGCGGCGTG CTCGCATTGC GCCGCATGCT GGTGGTGCCG
GTCGCGCGCA ACCCCGTTCC CTGA
|
|---|
| Protein sequence | MPSPKSTAFP SATQAALLFL AVFLCEFAIG AALRDANRWL GLNGMQLGVL SAVLGNGCVF
AVVMHQQKLS YRELFHQSPA SARATLMLVV PPVLLLVPGL MVVMAAVLNL LILIAPLSAW
EESMFSRMAD GSVAATLAVC LMAPLLEEML FRGIVLRGFL LRYSRWQAIV GSALLFGAAH
LNIYQFVVGL VMGTVLGWLY ERSRSLIPCI ALHAAYNSGT IFIGDWPDGS STADTAWALL
LVFIAGLCGV LALRRMLVVP VARNPVP
|
|---|
| |