Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1217 |
Symbol | |
ID | 7973387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1329873 |
End bp | 1330910 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644791814 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_002943134 |
Protein GI | 239814224 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAACG CCACGAACAC CCCGCGTCTC ACGGTCAGCA ACCTGAGCAC CAGCTTTCCC ACCGAGGACG GCCTGATCCG TTCGGTGGCC GATGTGAGCT TCTCGATCCA GCCCGGCAAG ACCACGGCGC TGGTCGGCGA ATCGGGCTCG GGCAAGTCGG TGACCAGCCT CACGCTGATG CGCCTGTTGC CCAAGACCGC GAACGCGCAG GTCAGCGGCT CGGCTTCTTT CGTGACCCGC GAGGGCAAGA CGCTCGACCT GCTGCAGATC GGCGAACGCG AGATGCGCAG CCTGCGCGGC AACCAGCTGT CGATGATCTT CCAGGAGCCG ATGACCAGCC TGAACCCGGT CTTCACCATC GGCGAGCAGA TTGCCGAAAG CGTGCGGCTG CACAAGGGCC TGGACCGCAA GGCGGCCATG GCCCATGCGC TGCGCATGCT GGAGCTGGTG GAAATTCCCG CGGCCGCGCA GCGCATCCAC GAGTACCCGC ACCAGCTCTC GGGCGGCATG CGCCAGCGCG TGATGATCGC GCTGGCCATG GCCTGCGATC CGACGCTGCT GATTGCCGAC GAGCCCACCA CCGCGCTCGA CGTCACCATC CAGGCGCAGA TCCTCGAGCT CATGCGCCGG CTGCAGGCCG AGACCGGCAT GAGCATTCTC TTCATCACCC ACAACCTCGG CGTGGTCGCG CACCATGCGG ACGACGTGGT GGTGCTCTAT GCGGGCCGCG TGGTCGAGAG CGCGCCCGTG CGGCCGCTGT TCGCGCAGCC CGAGCATCCG TACACGCAGG GCCTTTTGGC CTGCCTGCCG GGCAAGGCGC GGCTGCCGGG GCAGCCCAAG CCCAAGCGGC TGTTCGCGAT CCGCGGCCAG GTGTCGAGCC CGCTGGCACC GCCGCCGGGC TGCGCCTTCG AGCCGCGCTG CGACCATGCG CTGGCGGGCT GCAGGGAAGC GATTCCGCCG CTGATCGATA TCCGACCGGG CCGGCAGGCG CGCTGCATTC GCGTGCAGCC GGATGCTCAA CTTGCGAGGG TGGCATGA
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Protein sequence | MTNATNTPRL TVSNLSTSFP TEDGLIRSVA DVSFSIQPGK TTALVGESGS GKSVTSLTLM RLLPKTANAQ VSGSASFVTR EGKTLDLLQI GEREMRSLRG NQLSMIFQEP MTSLNPVFTI GEQIAESVRL HKGLDRKAAM AHALRMLELV EIPAAAQRIH EYPHQLSGGM RQRVMIALAM ACDPTLLIAD EPTTALDVTI QAQILELMRR LQAETGMSIL FITHNLGVVA HHADDVVVLY AGRVVESAPV RPLFAQPEHP YTQGLLACLP GKARLPGQPK PKRLFAIRGQ VSSPLAPPPG CAFEPRCDHA LAGCREAIPP LIDIRPGRQA RCIRVQPDAQ LARVA
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