Gene Vapar_1217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1217 
Symbol 
ID7973387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1329873 
End bp1330910 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content68% 
IMG OID644791814 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_002943134 
Protein GI239814224 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAACG CCACGAACAC CCCGCGTCTC ACGGTCAGCA ACCTGAGCAC CAGCTTTCCC 
ACCGAGGACG GCCTGATCCG TTCGGTGGCC GATGTGAGCT TCTCGATCCA GCCCGGCAAG
ACCACGGCGC TGGTCGGCGA ATCGGGCTCG GGCAAGTCGG TGACCAGCCT CACGCTGATG
CGCCTGTTGC CCAAGACCGC GAACGCGCAG GTCAGCGGCT CGGCTTCTTT CGTGACCCGC
GAGGGCAAGA CGCTCGACCT GCTGCAGATC GGCGAACGCG AGATGCGCAG CCTGCGCGGC
AACCAGCTGT CGATGATCTT CCAGGAGCCG ATGACCAGCC TGAACCCGGT CTTCACCATC
GGCGAGCAGA TTGCCGAAAG CGTGCGGCTG CACAAGGGCC TGGACCGCAA GGCGGCCATG
GCCCATGCGC TGCGCATGCT GGAGCTGGTG GAAATTCCCG CGGCCGCGCA GCGCATCCAC
GAGTACCCGC ACCAGCTCTC GGGCGGCATG CGCCAGCGCG TGATGATCGC GCTGGCCATG
GCCTGCGATC CGACGCTGCT GATTGCCGAC GAGCCCACCA CCGCGCTCGA CGTCACCATC
CAGGCGCAGA TCCTCGAGCT CATGCGCCGG CTGCAGGCCG AGACCGGCAT GAGCATTCTC
TTCATCACCC ACAACCTCGG CGTGGTCGCG CACCATGCGG ACGACGTGGT GGTGCTCTAT
GCGGGCCGCG TGGTCGAGAG CGCGCCCGTG CGGCCGCTGT TCGCGCAGCC CGAGCATCCG
TACACGCAGG GCCTTTTGGC CTGCCTGCCG GGCAAGGCGC GGCTGCCGGG GCAGCCCAAG
CCCAAGCGGC TGTTCGCGAT CCGCGGCCAG GTGTCGAGCC CGCTGGCACC GCCGCCGGGC
TGCGCCTTCG AGCCGCGCTG CGACCATGCG CTGGCGGGCT GCAGGGAAGC GATTCCGCCG
CTGATCGATA TCCGACCGGG CCGGCAGGCG CGCTGCATTC GCGTGCAGCC GGATGCTCAA
CTTGCGAGGG TGGCATGA
 
Protein sequence
MTNATNTPRL TVSNLSTSFP TEDGLIRSVA DVSFSIQPGK TTALVGESGS GKSVTSLTLM 
RLLPKTANAQ VSGSASFVTR EGKTLDLLQI GEREMRSLRG NQLSMIFQEP MTSLNPVFTI
GEQIAESVRL HKGLDRKAAM AHALRMLELV EIPAAAQRIH EYPHQLSGGM RQRVMIALAM
ACDPTLLIAD EPTTALDVTI QAQILELMRR LQAETGMSIL FITHNLGVVA HHADDVVVLY
AGRVVESAPV RPLFAQPEHP YTQGLLACLP GKARLPGQPK PKRLFAIRGQ VSSPLAPPPG
CAFEPRCDHA LAGCREAIPP LIDIRPGRQA RCIRVQPDAQ LARVA