Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1210 |
Symbol | |
ID | 7973380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1323287 |
End bp | 1324543 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644791807 |
Product | lipoprotein releasing system, transmembrane protein, LolC/E family |
Protein accession | YP_002943127 |
Protein GI | 239814217 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACTTC CTTATGAACT GAAGCTCGGC TGGCGCTACA CGCGCGCAGG CCGGGCGACG CGGCGCAACG GCTTCATCTC GTTCATCTCC GGCGTGTCGA TGCTCGGCAT TGCATTGGGG GTGGCGGCGC TGATCATCGT GCTCAGTGTG ATGAACGGCT TCCAGAAGGA GGTGCGCGAC CGCATGCTCG GCGTGGTGTC GCACATCGAA ATCTTGTCGC GCGACGGCCA GGCGCTGCCC GACATCGACG CCATCACGGC CGCCGCGCGC AAGAACCCCG AGGTGGTCGG CGCCGCGCCC TTCATTGCCA CGCAGGCGCT CATTGCGCGC GGCGAGGACA TGAAGGGCAC GCTGGTGCGC GGCATCGTGC CCAGGCTCGA ACCCGAGGTG ACCGACATCG CCACGACGGC GCAGAAGGGC ACGCTCGACA AGCTGGTGCC GGGCGAGTTC GGCATCGTGC TTGGCGGCGA ACTCGCGCGC TCGCTGTTCG TGCAGCCGGG CGACCAGGTC ACGCTGGTGG CGCCGGGCGG TCAGGTCACG CCCGCCGGCG TGGTGCCGCG GCTCAAGCAG TTCACGGTGG TGGGCACCTT CGATTCGGGC CACTACGAAT ACGACTCGGC GCTGGCCATG ATCCATGCGG AAGACGCCCA GCGCGTGTTC CGGCTCGAAG GCCCGACCGG CATCCGCATC AAGCTCAAGG ACCTGAACGA GGCGCGCGAA GTGGCCGACC AGATGGCCGT CACGCTGCCG GGCCAGTTCC TCATCCGCGA CTGGACGCGC CAGAACAAGA CATGGTTTGC GGCCGTGCAG GTCGAGAAAC GCATGATGTT CATCATCCTC ACGCTCATCG TGGCGGTGGC GGCCTTCAAC CTGGTGTCCA CGCTGGTCAT GACGGTGACC GACAAGCGCG CGGACATCGC CATCCTGCGC ACGCTGGGCA GTTCGCCGCG CAGCATCATG GGCATCTTCG TGGTGCAGGG CGCGATGGTC GGCGTGATCG GCACGGTGGC CGGGCTGCTG CTGGGGCTGG GCATTGCCTA CAACATCGAC GTGATCGTGC CGGCGCTCGA ACAGCTCTTC CACGCGAGCT TCCTGCCCAA GGACATCTAC CTGATCAGCA AGATGCCGAG CGATCCGCAG CGCGGCGACA TCATGCCGAT CGCGATCATT TCACTGGTCC TGGCTTTTCT TGCAACGCTG TATCCCAGCT GGCGCGCGAG CCGCGTCAAC CCTGCCGAGG CATTGCGCTA TGAGTGA
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Protein sequence | MRLPYELKLG WRYTRAGRAT RRNGFISFIS GVSMLGIALG VAALIIVLSV MNGFQKEVRD RMLGVVSHIE ILSRDGQALP DIDAITAAAR KNPEVVGAAP FIATQALIAR GEDMKGTLVR GIVPRLEPEV TDIATTAQKG TLDKLVPGEF GIVLGGELAR SLFVQPGDQV TLVAPGGQVT PAGVVPRLKQ FTVVGTFDSG HYEYDSALAM IHAEDAQRVF RLEGPTGIRI KLKDLNEARE VADQMAVTLP GQFLIRDWTR QNKTWFAAVQ VEKRMMFIIL TLIVAVAAFN LVSTLVMTVT DKRADIAILR TLGSSPRSIM GIFVVQGAMV GVIGTVAGLL LGLGIAYNID VIVPALEQLF HASFLPKDIY LISKMPSDPQ RGDIMPIAII SLVLAFLATL YPSWRASRVN PAEALRYE
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