Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1160 |
Symbol | |
ID | 7973329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1275620 |
End bp | 1276567 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791756 |
Product | ABC transporter related |
Protein accession | YP_002943077 |
Protein GI | 239814167 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGCGA TCTCATTCCA ATCGGTCTCC AAGACCTACC CTCCCTCCAG ACAGCAGCGG GCCCAAGGCA AGCAGGGGCT GCGCGCCGTC GACGAGGTCA GCTTCCAGAT CGAGCCGGGC GAGTTCTTCG GCCTGCTCGG GCCCAACGGC GCGGGCAAGA CCACGCTCAT CAGCATGCTG GCCGGCCTGT CCCGCCCCAC GGCCGGCGCC ATCAGCGTCC ATGGCTTCGA CGTGCAGCGC GACTATGCCG AGGCCCGGCG CCAGCTCGGC ATCGTGCCTC AGGAGCTGGT GTTCGACCCG TTCTTCAACG TGCGCGAATC GCTGCGCATC CAGTCGGGCT ACTTCGGCAT CAAGAACAAC GAGGCCTGGA TCGACGAGCT GCTGCAAAGC CTGGGCCTGG CCGACAAGGC CACGGCCAAC ATGCGCCAGC TCTCGGGCGG CATGAAGCGC CGGGTGCTGG TGGCACAGGC GCTGGTGCAC AAGCCACCCG TGATCGTGCT GGACGAGCCC ACCGCCGGGG TCGACGTCGA ATTGCGCCAG ACGCTCTGGC AGTTCGTCGC CAGGCTCAAC AAGGAGGGCA GCACCGTGCT GCTCACCACC CACTACCTCG AAGAGGCCGA GGCGCTGTGC AGCCGCATCG CGATGCTCAA GCTCGGCAAG GTGATCGCCC TGGACCGCAC CAGCGAGCTC CTGAAGTCGG CCGCCAGCAA CGTGCTGCGC TTCAAGACCG ACGCCATGCT GCCGTGGGCC ATTGCGCAGC ATGCGCGCAT CACCGGGCGC ATCGTGCAGC TGCCGGCGCA GAACGCCCAT GAAGTCGAAC AACTGCTGGC CGCGATCCGC GAAGCCGGCG TCGCGGTGGA AGACGTGGAA ATGCGCAAGG CCGACCTGGA AGACGTGTTC ATCGACCTGA TGGCAGGCGA GCAGACGCCG CTGGAGGTGG CGAGATGA
|
Protein sequence | MPAISFQSVS KTYPPSRQQR AQGKQGLRAV DEVSFQIEPG EFFGLLGPNG AGKTTLISML AGLSRPTAGA ISVHGFDVQR DYAEARRQLG IVPQELVFDP FFNVRESLRI QSGYFGIKNN EAWIDELLQS LGLADKATAN MRQLSGGMKR RVLVAQALVH KPPVIVLDEP TAGVDVELRQ TLWQFVARLN KEGSTVLLTT HYLEEAEALC SRIAMLKLGK VIALDRTSEL LKSAASNVLR FKTDAMLPWA IAQHARITGR IVQLPAQNAH EVEQLLAAIR EAGVAVEDVE MRKADLEDVF IDLMAGEQTP LEVAR
|
| |