| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1139 |
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| Symbol | |
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| ID | 7971127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1250662 |
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| End bp | 1252986 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791735 |
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| Product | penicillin-binding protein, 1A family |
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| Protein accession | YP_002943056 |
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| Protein GI | 239814146 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0388878 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCTGGG GGTTCGGCAT CGCCGCGGCC GGTGTTCTGG CGCTGCTGTG CGTGATCGCC
GTCGCCCTGG CTGTGGCCTA CCCCAACCTT CCCGACATCT CCGAGCTGTC GGACTACCGG
CCGAAACTGC CGCTGCGGGT CTTTTCCGCG GAGGGCATCC TGATTGGCGA ATTCGGCGAG
GAGCGGCGCA ATCTAACCCC GATCGCGGCA ATCCCCAAGC TCGTGAAGGA GGCGGTGTTG
GCTGCCGAAG ACACCCGCTT CTACGACCAC GGCGGCGTCG ACTACAAGGG CATGGTGCGC
GCCGGCCTGG CCAACATGAA CCGCGTGAAG AGCCAGGGCG CCTCGACCAT CACCATGCAG
GTGGCGCGCA ACGTCTACCT GAGCTCCGAG AAAACGCTGA CCCGCAAGAT CTACGAGGTG
CTGCTCACCT TCAAGCTGGA GCACCTGCTC ACCAAGGACC AGATCTTCGA GATCTACCTG
AACCAGATCT ACCTGGGCAA CCGCGCCTAC GGCTTCGCGG CCGCGTCGGA AGCGTATTTC
GGCAAGCCGC TGCAGGAGCT CTCCATTGCG CAGGCGGCCA TGCTGGCGGG CCTGCCCAAG
GCGCCGGGCG CGAACAACCC TGTCAACAAT CCGCAGCGCG CGCGCGGCCG CCAGTTCTAT
GTGATCGACC GCATGCAGGA CGCGGGCTTC ATCACCGCCG AGCAGGCCGC CGAAGCCAAG
AAAGAGGAAC TGCACCTGCG CGATGCGGCC GACCCGAACC GCCTGCACGC CGAATACGTG
GCCGAAACCG TGCGCCAGCT GATGTATGCG CAGTACGGCG ACAGCACCTA CACGCGCGGA
CTCAAGGTCT ACACCTCGTT GGTCGCCGCC GACCAGGCTG CGGCATACAA GGCCCTGCGC
AAGGGCATCA TGGACTACGA GCGGCGCCAG ATCTACCGCG GCCCCGAGAA ATTCGTCGAG
CTGCCCAACG ACCCGAAGGA GCTCGACGAT GCGGTCGACG ACGCGCTGAC CGACCATCCC
GACAACGGCG ACGTGATGGC GGCCGTGGTG CTCAAGGCCA ACGCCAAGGA AATCTCGGCC
GTGCGCGGCA ACGGCGACCC GGTGCAGATC ACGGGCGAGG GCCTCAAGCC CGCGCAGTCC
GGCCTTGCCG ACAAGGCGCC GCCCAACATC AAGATCCGGC GCGGCGCGGT GATCCGCGTG
GTGAAGACGC CCAAGAACAC CTGGGAAATC ACCCAGCTGC CCGAAGTGGA AGGCGCCTTC
GTCGCCATGG ACCCGCGCGA CGGCGCCATC AAGGCGCTGG TGGGCGGCTT CGACTTCGGC
AAGAACAAGT TCAACCACGT CACGCAGGCC TGGCGCCAGC CGGGCTCGAG CTTCAAGCCC
TTCATCTACT CGGCCGCGCT CGAGAAGGGC TTCACGCCGG CCACGGTCAT CAATGACGGA
CCCCTGTTCT TCGATGCCGG CACCACCGGC GGCCAGCCCT GGGAGCCCAA GAACTACGGC
GGGGGCTACG ACGGCCCGAT GTCGATGCGC ACCGCGCTCA TGAAGTCGAA GAACCTGGTC
TCGATCCGCA TCCTGCAATC GATCGGCACG CGCTACGCCC AGGAATGGAT CACCAATTTC
GGCTTCGACA AGGACAAGCA CCCGGCCTAC CTGCCGATGG CGCTGGGCGC CGGCGCGGTC
ACGCCGATGC AGATGGCCAC CGCCTACTCG GTGTTCGCCA ATGGCGGCTA CCGCGTCAAT
CCCTACCTGG TGACCCGCAT CACCGACCAC AAGGACAAGG TGCTGGTCGA CAAGCAGCCG
CCGCTGCTCA ACGAGACGAT CCGCGCCATT CCCCAGCGCA ACGCGTTCAT CATGGACACG
CTGCTGCAAT CGGTGGCGCG CGCCGGCACC GCGGCCAAGG CCCAGGCCAT GCTCAAGCGG
CCCGACCTCT ACGGCAAGAC CGGCACCACC AACGATTCGC TCGACGCCTG GTTCGCCGGC
TTCCAGCCCA CGATGACCGC CATCTCCTGG ATCGGCTACG ACACGCCGCG CAACCTGGGC
GACCGCGAAA CCGGCGGCGG CCTGAGCCTG CCGATCTGGA TCAACTACAT GGAAACGGCG
ATCAAGGGCG TGCCCGTGAC CGATCTTTCC GCCACGCCGC CGTCCGGCGT CGTGAGCGTG
GGCGGCGAGT GGTACTACGA CGACTACGCG CCGGGCCGCG GCGTGCCCAG CCTCGGCGTG
GACACCGCTT CATCGCCGCC GGCCGAGTCC CTGAGCGGCG TTCCGGTGAG CCCGCCCCCG
CCTCCCGAGG AGCGCAACCG CATCCTCGAC CTTTTCAGGA ACTGA
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| Protein sequence | MVWGFGIAAA GVLALLCVIA VALAVAYPNL PDISELSDYR PKLPLRVFSA EGILIGEFGE
ERRNLTPIAA IPKLVKEAVL AAEDTRFYDH GGVDYKGMVR AGLANMNRVK SQGASTITMQ
VARNVYLSSE KTLTRKIYEV LLTFKLEHLL TKDQIFEIYL NQIYLGNRAY GFAAASEAYF
GKPLQELSIA QAAMLAGLPK APGANNPVNN PQRARGRQFY VIDRMQDAGF ITAEQAAEAK
KEELHLRDAA DPNRLHAEYV AETVRQLMYA QYGDSTYTRG LKVYTSLVAA DQAAAYKALR
KGIMDYERRQ IYRGPEKFVE LPNDPKELDD AVDDALTDHP DNGDVMAAVV LKANAKEISA
VRGNGDPVQI TGEGLKPAQS GLADKAPPNI KIRRGAVIRV VKTPKNTWEI TQLPEVEGAF
VAMDPRDGAI KALVGGFDFG KNKFNHVTQA WRQPGSSFKP FIYSAALEKG FTPATVINDG
PLFFDAGTTG GQPWEPKNYG GGYDGPMSMR TALMKSKNLV SIRILQSIGT RYAQEWITNF
GFDKDKHPAY LPMALGAGAV TPMQMATAYS VFANGGYRVN PYLVTRITDH KDKVLVDKQP
PLLNETIRAI PQRNAFIMDT LLQSVARAGT AAKAQAMLKR PDLYGKTGTT NDSLDAWFAG
FQPTMTAISW IGYDTPRNLG DRETGGGLSL PIWINYMETA IKGVPVTDLS ATPPSGVVSV
GGEWYYDDYA PGRGVPSLGV DTASSPPAES LSGVPVSPPP PPEERNRILD LFRN
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