Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1125 |
Symbol | |
ID | 7969647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1235476 |
End bp | 1237605 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791721 |
Product | TonB-dependent receptor |
Protein accession | YP_002943042 |
Protein GI | 239814132 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCTG CACTTTCCGC TGCCGCCACT GCCGCCGTCC GCCTGCTCCT GCTGGGAGCT CCGCTCGCCG CAGCGGCGCA GCAGGCCGAC CGCGGCAGCC TGCCCGAAGT CACCGTCTCC ACGCCGCGCG GCGAGGTCGC TCCGTTCAAC GTGCCGGGCT CGGTGGACCG GGTCGACGGC GCCGAGATGC GCGACAGCCG GCTGCAGGTC AATCTTTCCG AAAGCCTGGG CAGCGTTCCG GGCCTGCAGG TGCAGAACCG TCTGAACTAC GCGCAGGACC TGCAGCTGTC GATCCGTGGC TTCGGCGCGC GTTCCACCTT CGGCGTGCGC GGCGTGCGGC TGTATGTCGA CGGCATTCCC GCGACGCTGC CCGATGGCCA GGGCCAGACT TCCAACATCG ACATCGGCTC GCTCGACCGC ATCGAGATAT TGCGCGGGCC GTTCTCGGCG CTCTACGGCA ATTCGTCGGG CGGCGTGCTG CAGGCCTTCA CCGCGTCGGG CGAGGGCGCG CCGCGGCTTT CGTACTCGGC GGCCGGAGGC AGCTTCGGCA CCTGGCGCCA GTCGCTCCAG GCCAGCGGAT CGCAGGGCGC GGTCGACTAC CTGCTGAACG CCAGCCGCTT CCGGACCGAC GGCTGGCGCG AACACAGCGC GGCACGGCGC GACATTGCGA ACGGCAAGCT CGGCATCGCG CTGGACAACG GCGACAAGCT CACGCTGGTG CTCAACAGCG TGCGCATCAG CGCGCAGGAT CCGCTGGGCC TCACGGCCGA CCAGTACGCG CTCGCGCCGC GCAGCGCACC GCTCGCCACG CAGTACGACA CCCGCAAGAC GGTGGAGCAG ACGCAGGCCG GCCTGCTCTA TGAGCGGCGC ATCGATGCCG CGCAGTCGCT GCGGCTCATG GTCTACGGCG GCGAGCGCAA GACCGTGCAG TACCAGTCGA TTCCGCCGTC GGCGCAGCAG AACCCGCTGC ATGCGGGCGG CGTGATCGAC CTCAAGCGCC AGTACGGCGG AGCCGACCTG CGCTGGACCG CCGCGCTGCA ACTGGCCGAC CGGCCGCTCG AACTGGTGGC GGGGCTGGGC TACGACAGCC TGCGCGAACA GCGCCGCGGC TACGAGAACT ACCTCGGCCG CGTGGCCGCA CCCGTGCTGG GCGTGCAGGG GCGCCTGCGG CGCAGCGAGC GCAACGAGGT CTGGAACCTC GACCCCTACG CGCAGGCCAC CTGGCGCCTT GCGGAGCAAT GGACGCTCGA GGCCGGCATG CGCCGCAGCA GCGTGCACTT CGATTCGCAG GACCGCTACA TCGTGGGCGC CAACCGCGAC GACAGCGGCA GCGCGCGCTA CAGCAAGACG CTGCCCGTGG CTTCGCTGCG CTACCAGGCC ACGCCCGATC TTGCGCTGTA CGGCTCGATC GGCCGGGGCT TCGAGACGCC GACGCTCAAC GAGCTGTCGT ACCGCGCAGG CGGTGCCAGC GGGCTCAACT TCGCGCTGCG GCCCTCAGTC AACGACAGCG TCGAACTGGG TGCGAAGGCG CGGCTGGGCG GAGGGCTGCT GACGGCGGCG CTGTTCCAGA CCCGCACCCG CGACGAGATC GTGACCGACA CCAACACCGG CGGCCGCGCC ACGTTCCAGA ATGCGGGCCG CACGCGGCGC AACGGCTTCG AGCTGGCCTG GCAGCACGAG ACGGCCAGCC ACTGGCGCAC CCAGCTGGCC TACACCTGGC TCGACGCGCG CTACCGCGAT GCCTTCTGCT CGCCGTCGCC CTGCGCGGCA TCCAACACGG TGGCGGCGGG CAACCGCATT CCGGGCATTG CGCGGCAGTC GCTCTTCGCA TCGCTGGGCT GGGTGCCGCC CGAAGGCTGG CGCGCCGGCG TCGAGATGCG CGCGCTCGGG CGCATGCAGG CCAACGACGC CAACACCGCC AGCGCGCCGG GTTATGCCGT CGCGGCGCTG TACGCCGGCT ACCTGAAGAA ATGGGAGCGC TGGGAGTTCA ACGCCTTTGC GCGCGTCGAC AACCTGTTCG ACCGCCGCTA CGTGGGCTCG CTGATCGTCA ACGAGGGCAA TGCGCGCTAC TACGAGCCCG CGCCGGGCCG CAACTGGACG GTGGGCCTGA GCGGCGCCTA CCGCTTCTGA
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Protein sequence | MKPALSAAAT AAVRLLLLGA PLAAAAQQAD RGSLPEVTVS TPRGEVAPFN VPGSVDRVDG AEMRDSRLQV NLSESLGSVP GLQVQNRLNY AQDLQLSIRG FGARSTFGVR GVRLYVDGIP ATLPDGQGQT SNIDIGSLDR IEILRGPFSA LYGNSSGGVL QAFTASGEGA PRLSYSAAGG SFGTWRQSLQ ASGSQGAVDY LLNASRFRTD GWREHSAARR DIANGKLGIA LDNGDKLTLV LNSVRISAQD PLGLTADQYA LAPRSAPLAT QYDTRKTVEQ TQAGLLYERR IDAAQSLRLM VYGGERKTVQ YQSIPPSAQQ NPLHAGGVID LKRQYGGADL RWTAALQLAD RPLELVAGLG YDSLREQRRG YENYLGRVAA PVLGVQGRLR RSERNEVWNL DPYAQATWRL AEQWTLEAGM RRSSVHFDSQ DRYIVGANRD DSGSARYSKT LPVASLRYQA TPDLALYGSI GRGFETPTLN ELSYRAGGAS GLNFALRPSV NDSVELGAKA RLGGGLLTAA LFQTRTRDEI VTDTNTGGRA TFQNAGRTRR NGFELAWQHE TASHWRTQLA YTWLDARYRD AFCSPSPCAA SNTVAAGNRI PGIARQSLFA SLGWVPPEGW RAGVEMRALG RMQANDANTA SAPGYAVAAL YAGYLKKWER WEFNAFARVD NLFDRRYVGS LIVNEGNARY YEPAPGRNWT VGLSGAYRF
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