| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1108 |
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| Symbol | |
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| ID | 7969630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1214753 |
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| End bp | 1216063 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791704 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002943025 |
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| Protein GI | 239814115 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.633554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTT TTCTGAAAGC GGGCCTCGTC CTCGCACTCG CCGGCACGGG GCTCGCCTCC
CATGCCGCCA CCGAACTCGT GATCGCGACC GTCAACAACG GCCACATGAT CGAGATGCAG
AAGCTCACGC CCTTCTTCGA AAAGGCCAAC CCCGACATCA AGCTCAAGTG GGTCACGCTG
GAAGAAGGCA CGCTGCGCCA GCGCGTGACC ACCGACATCG CCACCAAGGG CGGCCAGTTC
GACGTGATGA CCATCGGCCT GTACGAAACC CCGATCTGGT CGAAGAAGGG CTGGCTCAAG
CCCATTGCCA CCGACGCCGC CTACGACGTG GACGACCTGC TGCCCGCCAT CCGCAACGGC
CTGTCGACCG ATGGCAAGCT CTACGCCGCG CCGTTCTACG GCGAGAGCTC GATGCTCATG
TACCGCAAGG ACCTGGCCGA CAAGCTGGGC GTGAAGTTCT CCGACCAGCC GACCTGGGCG
CAGGTGAAGG AGTTCGCCGA CAAGGCCAAC GACCCGAAGG CCGGCGTGTA CGGCATGTGC
CTGCGCGGCA AGCCGGGCTG GGGCGACAAC ATGGCCTTCC TGACCACGCT GGTCAATACG
CATGGCGGCC AGTGGTTCGA CATGCAGTGG AAGCCGCAGA TCGACACCAA GCCCTGGAAG
GATGCGATCA CCTTCTACGT CGACCTGATG AAGAAGGACG GCCCGCCGGG CGCCTCGGCC
AACAGCTTCA ACGAGAACCT CGCGCTCTTC AACGAAGGCA AGTGCGCGGC CTGGGTCGAC
GCGACCATCG CGGCCTCGTT CATCAGCGAC CCGAAGCAGT CGAAGGTGGC CGACAAGGTG
GCGTTCGCGC AGGCACCGAC CGCCGCCACG CCCAAGGGCG CCAACTGGCT GTGGTCGTGG
AACCTCGCCA TTCCGGCCAG TTCGTCCAAG GACGAGGCCG CGCAGAAGTT CATCAAGTGG
GCCACGTCCA AGGACTACGT CAACCTGGTG GCCAAGGAAA CCGGCTGGGC TTCGGTGCCG
ACCGGCACGC GCAAGTCGAC CTATGCGAAC CCCGAGTTCC AGAAGGTCGC CAAATTCGCC
GAAGCCGAGA AGAAGGCCAT CGATACGGCC AACCTCAGCG ACAGCACGCT GCCCAAGTCG
CCCTACGTGG GCGTGCAGTA CGCGGCCATT CCCGAGTTCC AGGCCATCGG CGTGGCGGTG
GGCCAGCAGA TGAGCGCGGC GCTGTCGGGC AAGGTCACGG TGGACCAGGC GCTCAAGACC
TCGCAGACGG CGGCGGAGCG CGAGATGAAG AAGGCTGGCT ACTACAAGTA A
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| Protein sequence | MKRFLKAGLV LALAGTGLAS HAATELVIAT VNNGHMIEMQ KLTPFFEKAN PDIKLKWVTL
EEGTLRQRVT TDIATKGGQF DVMTIGLYET PIWSKKGWLK PIATDAAYDV DDLLPAIRNG
LSTDGKLYAA PFYGESSMLM YRKDLADKLG VKFSDQPTWA QVKEFADKAN DPKAGVYGMC
LRGKPGWGDN MAFLTTLVNT HGGQWFDMQW KPQIDTKPWK DAITFYVDLM KKDGPPGASA
NSFNENLALF NEGKCAAWVD ATIAASFISD PKQSKVADKV AFAQAPTAAT PKGANWLWSW
NLAIPASSSK DEAAQKFIKW ATSKDYVNLV AKETGWASVP TGTRKSTYAN PEFQKVAKFA
EAEKKAIDTA NLSDSTLPKS PYVGVQYAAI PEFQAIGVAV GQQMSAALSG KVTVDQALKT
SQTAAEREMK KAGYYK
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