Gene Vapar_1099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1099 
Symbol 
ID7969621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1205821 
End bp1206870 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content71% 
IMG OID644791695 
ProductABC transporter related 
Protein accessionYP_002943016 
Protein GI239814106 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGGCA TCGAATTGCG CAACGTCACC AAGCGCTACG GCACCGACAA AAACGGGCCG 
CTGGCGGTCA AGGGCATCAG CTTCGAGGTG CCGGCGGGCA CGCTCACCAC CATCCTCGGG
CCTTCGGGCT GCGGCAAGAC GACCACGCTG CGCATGATCG CGGGGCTCGA ATCGGCCAGC
TCCGGCTCGA TCTTCATGGG CGGGCGCGAC GTGACCACGC TGGGCCCGGC CGAGCGCAAC
GTGAGCATGA TGTTCCAGAG CTACGCGCTG TTCCCGCACA TGAACGTGAT CGAGAACGTG
GGCTACGGCC TGCGCATGAG CGGCGTGAAG AAGGACGAGG CCGCCTTGCG CGCGCGCGGC
GCGCTCAAGG GCGTGGGGCT GGTCGGCTTC GACGAGCGGC TGCCGAGCGA ACTCTCTGGC
GGCCAGCAGC AGCGCGTGGC GCTGGCGCGC GCGCTGGTGC TGGAGCCCGC GGTGCTGCTG
TTCGACGAGC CGCTGTCCAA CCTCGACGCC CGGCTGCGGC GCGAAATGCG CGAGGAGATC
CGCGCGCTGC AGCAGCGCCT GAAGCTCACG GTGGCCTACG TCACGCACGA CCAGAGCGAG
GCCCTGGCCG TGAGCGACCA GATCATCGTG ATGGACCACG GCGTGATCGC CCAGCGCGGC
ACGCCCGAGC AGCTCTATGC CCGGCCCGAG AGCGAGTTCG TGGCCGGCTT CATGGGCGAG
GCGATGGTGT TCCCGGCCAC GGCACAGGCC GACGGCAGCG TCGCGCTCGG CCCGCTGCGG
CTGCAGCCGC GCCATGCGGT GGCGCCCGGC GCGGTGAAGG TGGCGGTGCG GCCCGAGGCC
TGGGAGATCG GTGCCGCCGG CACGGCCGCG GGCCTGCCCG CCACGCTGCG CAAGGCGGCC
TACCTCGGCA GCTTCTACGA ATACGGCTTC GACACGCCGC TGGGGCCGGT CTTCGTGGTG
TCGACCGATC TGTCGAGTCC CCTGGCCGCG GGCGCCGAGG CCACGCTGTC GCTGGCGGCG
CATGGCGTGA GCGTGGTGCC CGCCGCGTGA
 
Protein sequence
MNGIELRNVT KRYGTDKNGP LAVKGISFEV PAGTLTTILG PSGCGKTTTL RMIAGLESAS 
SGSIFMGGRD VTTLGPAERN VSMMFQSYAL FPHMNVIENV GYGLRMSGVK KDEAALRARG
ALKGVGLVGF DERLPSELSG GQQQRVALAR ALVLEPAVLL FDEPLSNLDA RLRREMREEI
RALQQRLKLT VAYVTHDQSE ALAVSDQIIV MDHGVIAQRG TPEQLYARPE SEFVAGFMGE
AMVFPATAQA DGSVALGPLR LQPRHAVAPG AVKVAVRPEA WEIGAAGTAA GLPATLRKAA
YLGSFYEYGF DTPLGPVFVV STDLSSPLAA GAEATLSLAA HGVSVVPAA