Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1085 |
Symbol | |
ID | 7969607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1188677 |
End bp | 1189822 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644791681 |
Product | porin Gram-negative type |
Protein accession | YP_002943002 |
Protein GI | 239814092 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.923155 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGGTCGACG CTTCGATCAG CGGCTACTCG AACAGCTCGC GCGACCTGAA CCATGGCGTG ACGTACAACG CCTTCGGCTT CCCGGTTGCC TATAACCCGT TCTACGTCAA CAAGGGCAGC GTGCGTACCA GCAGCGTTGG CATGACCCAC TCGGGCTACA ACTCCAGCCG CCTGGGCTTC CGCGGTACGG AAGACCTCGG TGGTGGCCTT GCAGCGAGCT TCTGGCTCGA AGCGCCGGTC GCCAACGACG ATGGCAGCCA AGGCGTGGCC AATTTCTCCC GCCGTTCCAC GGTGAGCCTG TCGGGTGGTT TCGGTGAAAT CCGCCTCGGC CGCGACCTGA CCCCCTCGTT CCACAACAAC TCCACCTTCG ATCCCTTCGG CACCAACGGC GTTGGCACCA ACCTGATCCA GACGGCCACC AGCGCATTTG GCAATCCCAC GCGCGCCAGC AACTCGGTCA GCTACTTCCT GCCGCCGAAC CTCGGCGGCT TCTACGGCCA GCTGATGTAC GGCTTCCACG AGAAGACCAA GTACAGCCCG GGCCTGGCCA CGCCTCACGC GGCCGACAAC TCGCGCACCG GCCGATACAT CGGCGGCCGC TTCGGCTATG CCAACGGTCC GCTCGACGTT GCAGCGGCTT ACGGCAGCAA CACCGTGGGC GACGACTACT ACGCCGGCAC GACCACCAAG GTCAACACCT TCAACCTCGG CGCTTCGTAT GACTTCGGTC CTGCAAAGCT CTTCGGCGAA CTGTCCCACG CCCGCGAAAA GACCGATATC GACGGCGACT TCTTCGCCCG CCCGGCTTCC GTGGCATCGA ACAAGCTCAA TGGCTGGCTG CTGGGCGTGA CGGTTCCGGT CGGTGCCGGC CTGATCCGCG CGTCGTACTC GGCCGTGAAG TACAAGTCGG GCGACAACAA CCCGTTCTTC AACGAACCGA ATCCGAAGGC CAACAAGCTG GCACTGGGCT ACGTGCACAA CCTGTCGAAG CGCACGGCCC TGTACGCAAC GGTTGCCCGC ATCAGCAACA AGAACGGTGC AGACCTGAGG GTCAGCCCCG ATTTCAGCCC GAAGTTCATC AGCAACGACA TCTTCACCCC GAAGACCTCG ACCGGCTACG ACTTCGGCAT CCGCCACGCC TTCTGA
|
Protein sequence | MVDASISGYS NSSRDLNHGV TYNAFGFPVA YNPFYVNKGS VRTSSVGMTH SGYNSSRLGF RGTEDLGGGL AASFWLEAPV ANDDGSQGVA NFSRRSTVSL SGGFGEIRLG RDLTPSFHNN STFDPFGTNG VGTNLIQTAT SAFGNPTRAS NSVSYFLPPN LGGFYGQLMY GFHEKTKYSP GLATPHAADN SRTGRYIGGR FGYANGPLDV AAAYGSNTVG DDYYAGTTTK VNTFNLGASY DFGPAKLFGE LSHAREKTDI DGDFFARPAS VASNKLNGWL LGVTVPVGAG LIRASYSAVK YKSGDNNPFF NEPNPKANKL ALGYVHNLSK RTALYATVAR ISNKNGADLR VSPDFSPKFI SNDIFTPKTS TGYDFGIRHA F
|
| |