| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1074 |
|---|
| Symbol | |
|---|
| ID | 7969596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1179484 |
|---|
| End bp | 1180284 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644791670 |
|---|
| Product | putative general secretory pathway N transmembrane protein |
|---|
| Protein accession | YP_002942991 |
|---|
| Protein GI | 239814081 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACGC GCTCCTCCCT TGCCGAATCC GCGCCGCGCC GCGGCTGGCG CTGGGCCCTG
CTCGGCATCG TGCTGGGGGC GCTGCTGGCG CTGGTGCTGT TCGCGCCCGC GCGCTGGCTG
GCCACGGCGC TCTCGAACTG GAGCCAGGGC CGGCTGCTGC TCGTCAACCC GCGCGGCACG
GTCTGGAACG GCACCGCGGC CGTGGTGCTT GCCAGCGGCG CCGGCGGCGC CGAGGCGGTG
TCGCTGCCCG GCGCGCTCAA CTGGCGCATG CGCCCGGCCT GGAGCGGCAT GTTCGCCGTG
CTCGATCTGC CCTGCTGCGC GGCGCGGCCG CTCCAGCTCA AGGCCAGCCC GCGCACGGAC
GGCATGCAGC TGCAGTGGGG CGACGGCAGT TCGCGCTGGC CCGCCACCTT GCTCACCGGC
CTGGGCGCGC CCTGGAACAC GCTCAGGCTC GAGGGCACGC TCGACCTCTC CACCCGGGGC
CTCTCGATGC AGTGGGACGG CCCCGTGCTG CGCATCGCGG GCCAGGCCAC GCTCGACGCC
ACCGACGTGT CGTCCAGCCT CTCGACGCTC AAGCCGATGG GCAGCTACCG CCTCACGCTC
GAAGGCGGCA GCCGCCCGAG CCTGCTGCTG AGCACGCGCG AAGGCAGCCT GCAGCTGAAC
GGCAGCGGCA GCTGGAACGG CACCGCCTTT CGCTTCAACG GCGAAGCCAG TGCCGCGGCC
GGCCGCGAAG ACGCGCTTTC CAATTTGTTG AACATCATCG GGCGGCGCGA CAACGCGCGT
TCGATCATCA CCCTGGGTTG A
|
|---|
| Protein sequence | MVTRSSLAES APRRGWRWAL LGIVLGALLA LVLFAPARWL ATALSNWSQG RLLLVNPRGT
VWNGTAAVVL ASGAGGAEAV SLPGALNWRM RPAWSGMFAV LDLPCCAARP LQLKASPRTD
GMQLQWGDGS SRWPATLLTG LGAPWNTLRL EGTLDLSTRG LSMQWDGPVL RIAGQATLDA
TDVSSSLSTL KPMGSYRLTL EGGSRPSLLL STREGSLQLN GSGSWNGTAF RFNGEASAAA
GREDALSNLL NIIGRRDNAR SIITLG
|
|---|
| |