| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1047 |
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| Symbol | |
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| ID | 7972018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1146015 |
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| End bp | 1147229 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791643 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002942964 |
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| Protein GI | 239814054 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCAGC CTGACGCCAA CGCGGTGAAC GCCGCGGTCC CCATCGCAGA AGCCGCCCCG
AAGCTGCACG CCGGCTTCCT GAAGAGCAAC CTGCGCGAAT ACGGCATGCT GATCTCGCTG
GTCGCGATCA TGGTGCTGTT CCAGGTGCTG ACCGACGGCA CGCTGCTGCG GCCGCTGAAC
CTCACGAACC TGCTGCTGCA GAACAGCTAC GTCGTCATCA TGGCGCTGGG CATGCTGCTG
GTGATCGTGG CGGGGCACAT CGATCTGTCG GTGGGCTCGG TCTGCGGCTT CATCGGCGCA
CTGGCGGCGG TGCTGATGGT GGAGTACGAA TGGCACTTCG TGCCGACGGC CATCATCAGC
ATTGCGGCGG GTGCGATCAT CGGCGCCGCG CAGGGCTGGT TCGTCGCATT TCGCAAGATT
CCTTCGTTCA TCGTCACGCT CGCGGGCATG CTGGTGTTCA AGGGGCTCAC GCTGGCGCTG
CTGGCGGGGC AGTCGGTGGG GCCGTTCCCG GTCGAGTTCC AGCGGCTGAG CTCGGGCTTC
ATTCCCGATC CGCTGGGCGG TGACACGCTT CGCACCACCT CGCTGGTGGT CGGCGCGCTG
GCCGCGGCGG CGCTGGTGTT CTTCAAGCTG CGCGGGCGCG CCAAGCTCGC GGCGCACGGC
ATGGAGACGG AGCCGTACGT ATTCTTCCTG GTGAAGAACC TGTTCTTCGC GGCCATCATC
CTGTTCTTCA GCTACCTGCT CTCGACCTAC AAGGGCCTGC CCAACGTGCT GATCGTGATG
GCGGTGCTGA TCGTGGTGTA CGACTTCGTC ACCAACCGCA CCACCATCGG CCGGCGCATC
TATGCGCTGG GCGGCAACGA GAAGGCGGCG CGGCTGTCGG GCGTGAAGAC GCAGCGGCTC
GCCTTCCTGA CCTTCGTCAA CATGGGCGCG CTGGCCGCGC TCGCGGGCCT GGTGTTCGCG
GCGCGGCTCA ACACGGCCAC GCCCAAGGCG GGCCTGGGCT TCGAGCTCGA CGTGATTGCG
GCCTGCTTCA TCGGCGGGGC CTCGGCCTCG GGCGGCGTGG GCCGCGTGAT GGGCGCGGTG
ATCGGCGCCT TCATCATGGG CGTGATGAAC AACGGCATGT CGATCCTGGG CATCGGCATC
GACTACCAGC AGGTCATCAA GGGCCTGGTG CTGCTGGCGG CCGTGTTCAT CGACGTCTAC
AACAAGAACA AGTAG
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| Protein sequence | MSQPDANAVN AAVPIAEAAP KLHAGFLKSN LREYGMLISL VAIMVLFQVL TDGTLLRPLN
LTNLLLQNSY VVIMALGMLL VIVAGHIDLS VGSVCGFIGA LAAVLMVEYE WHFVPTAIIS
IAAGAIIGAA QGWFVAFRKI PSFIVTLAGM LVFKGLTLAL LAGQSVGPFP VEFQRLSSGF
IPDPLGGDTL RTTSLVVGAL AAAALVFFKL RGRAKLAAHG METEPYVFFL VKNLFFAAII
LFFSYLLSTY KGLPNVLIVM AVLIVVYDFV TNRTTIGRRI YALGGNEKAA RLSGVKTQRL
AFLTFVNMGA LAALAGLVFA ARLNTATPKA GLGFELDVIA ACFIGGASAS GGVGRVMGAV
IGAFIMGVMN NGMSILGIGI DYQQVIKGLV LLAAVFIDVY NKNK
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