Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1037 |
Symbol | |
ID | 7972008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1131030 |
End bp | 1135784 |
Gene Length | 4755 bp |
Protein Length | 1584 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791633 |
Product | Mur ligase middle domain protein |
Protein accession | YP_002942954 |
Protein GI | 239814044 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.57988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCTGT TGAACCGCGC CAGGCAGATA CTGGCCGCCC CGGACGGCAC GCTGCCCGGC GCCGCCGCCA CGCCCGAGGC CGGCTGCGTG GTACTGATTG CCATGGGCGA CGGCACGAGC CGCGCGCGCG TGGTTGCCGG GCGCGCCGAA AGCGCCGAGC AGGCCTGGCA ACAGGCCAGC GATGCAGCAG TTGCGCTCGC ACAGCGCATC GGCATGCAGC CGCGCCATGT GCGCGTGGAA CTGGTCGACC AGGTCGAGCC CATGAGCTGG GGCGCGCTGA AGGCCCGCCT GGCGGGCACC AGGCGCAACT ACTTCAACCA TGGCGTGTCC TTCGACGCGA AGTTCGAGGT GGCGCTGCTC GCGCCGGAGA TCAACGGCAG CGCCGTCTTC TACAACGGCA CCGTGGACCA TGCCGAGCCC AATCCGGGCA ACCTGCGCCT TCATGCGAAG CGGCGCTTCG GTGCCGAACT CGATTTTCCG CAGGATGACG CGGCGCCGGT GTGGTGCTTC ACCACGCGCG CGGCCTATGC CGATACCGAA GGCGCGTGGC CGATCACTCC CGCGGGCCAG TCGGCGGGCT ACCGCACGCT GCCCGAGTGG GGCGCCGGCC AGGTGCGCAG CCTCGTGGAC AGCGCGAGCG ACTATCTTGC GGCGCAGGTC AAGCCCACGG GCGAGTTCCA CTACGGATGG TTCCCCTGCT TCGACCGCGC GATTCCCACC TACAACACGC TGCGCCACGC GAGCTCGACC TATGCGTTGC TCGAGGCCTG GGAGCTGACC CGCAGCGACA GCCAGAAGGC GGCCATCGAC CGCTCGCTGT CGCTGCTGAC GAAGCGGCTG ATCCGCCAGG CCGAGCTGCC GGGCGGCACG CGCGCGGCCT ACCTGCTGGA CGTCGGCGAC GAGATCAAGC TCGGCGGCAA CGCGGTGTGC CTGCTGGCGC TCGTCAAGTA CACGGAGCTC ACGGGCGATC CGCAGTACCT GCCGCTGATG GAGCAGCTCG CGCTCGGCAT CCAGGCCATG CAGGACCCGG CCAGCGGGCG CTTCGTGCAC GTGCTCAACT ACCCCTCGCT CGAAGTGAAG GACGCCTTCC GCGTCATCTA CTACGACGGC GAAGCCGCCT TCGGCCTGAT GCGCCTGTAC GGCCTCACGC GCGACGAGCG CTGGCTCGCG GTGGTCGAGA AGGCCTTCGA GCATTTCATT GCCGCGGAGC ACTGGCGCGC GCACGACCAC TGGCTGAGCT ACTGCGTCAA CGAGCTCACG CGTGTTCGGC CCGAGACGCG CTACTACCAG TTCGGGTTGC GCAACGTGGC CGACTACCTG GACTTCGTGC TGGAGCGCAT CACCACCTTT CCGACCCTGC TCGAGCTCAT GATGGCCGCG CGCGAGATGG TGGAGCGCCT GGCCGCCGAC CCCGCGCTGC GCCCGCTGCT CGAAGGCTTC GACCGCGCCA AGTTCGACCG CGCGCTCGAG CACCGCGCGC GCTACCTGGC CAACGGCTAC TTCTGGCCCG AGCTCGCGAT GTTCTTCCGC AACCCGGACC GCATCACCGG TTCGTTCTTC ATCAAGCACC ACAGCTTCCG CGTGCGCATC GACGACGTGG AGCACTATCT CTCGGGCTAC GTGGCTTACC ACCGGCTGTT GAAGCACCGC GAAGCATCGG GACTCCCGGC TGCGTGCGGA ATTCCCCAAG CCACTTCTGC GCCAGCGCCG GCGGACAGTG GCCGCGCGCC CGTCGCGGTC TGGGGCGGCG ACGTGAACCT CGGCCGCCGG CTGCACTACC GCCTGGCAGA GCTCGGCGGC CCGCAGGAGA TGCTTGGCGG CATCGCTGCA CTTCGCGAGG CGGACCTGCG CATCGCCAAC CTCGAATGCG TGGTCGCCAC CACCGGCGAA CAGGGCGTCG AGAAGGATGA GAGCAGCCCC TACTACTACC GCGCCCGGCC CGAGATGCTC GCGGTGCTGG CCGAAGCGGG CATCGGCATG GTCGCCACCG CCAACAACCA CAGCGGCGAC TACGGAGCCG CCGCGCTGAT GGAGCAGCAG GCGCTGCTGG ATGCCGCCGG CATTGCGCAC GCGGGCACCG GGCGCAACCT GGATGAGGCG CTGCGGCCGG CCATCGGCCG GGCCGGCGGC GTGCGCGTGG CGCTGTTCTC GCTCGACGCC ACGCAGCCGC GCTTCGCGGC AACGGCCGAT GCTCCGGGTG CCGCCTGGCT GCCGCTCGGC GATCCCGCCG CCTGGACTGC CACGCTTGCG CCGCGCATTG CCGCCGCGCG TGCCGAGGCC GATGTGGTGC TGGTGGCCGT GCACTGGGGC GCAAACCTCG AAACCGCGCC TTCGCAGGCC GAAATCGATG TCGGCCATGC CATCGTCGAT GCCGGTGCCG ACGCAATTCT CGGCAGCTCG GCCCATGTGC TGCAGGGCAT CGAGATCTAC CGCGGCCGGC CGATCCTGCA CGATGCGGGC GACCTGTTGT TCGAATCCGT CCGCAACGAC CTCGGGGATT CCGGTGTGTT CTCGCTGGCG CTGAGTGTGC GCGGTGTCGA AGAGGTGGTG TTCACGCCCA TTGGCGTGGG TTTCGGTTTC TCGCGGCAGC ACACGGGCGC GCCGGCCGAG GCCGCGAGTG CGCGCTTCGC CGAGCAATGC CGCGCACTGG GGACCGAAAT GGTGCCGGTG GCGGGAGGCC GGTGCGCGGT GAGGCTGTCG CCACCCGAGC GGCGGCCCGC CCTCGCCGCC GCAGCGCCCG CCGCGCGCGC GCCTCGCGCC ATCAGGCCGC TCCTCGCGCC CCGGCCCGAA TGGATGGCCG ATGCGGTGCC GCCCGACGCA TGGGTGCCGC CTCTCCAGGC CGGGCCGCTG CGCCTGGTGG GCGTGCGTTG CGCGCCGCGC CAGCTCGTCG GGCGGCGCAT GCTGTGGGTG GAGTCTTTCT GGACCGCCGA CGCGCCCGTA ACGGCCGACC TGCGCATCCA GTTCCGCGCG GTCCCGCTGC GCAGCACCCG CATGCCCGCG TGGGGCGAAG GCATGGACCA CGAGCCCTGC GACTGGATGT GGCCGACCAG CCGATGGGAG CCGGGCCGCA TCTATCGCGA CCGCTACGGG CTGCGCGCGC CTCGCGCCGG CCTGCTGGAG AGCGATGTGC TGCAGCTCGA GCTGCGCGTA CGCGGCGCGC TGGCTGGGCT GCCGCCCGCG CGCCGGCTGT CCATCTGGTG CGGCCTGCGC GTGCCCGGTG CGCCGGTGCC ATTGCCCGCG CGGCCCGCGC CCGTGCCCGC GGCCCTGCAT CCCGGTGCCA GCCCGACCCC GGCGCCGGTC TGGACCGCCG AGCATCTGCA GCGCATCACG GGCGGCCGAT GGCTGGTCGA GCCTCCGCCA GGCTGGTTCG TGAACTCGGT GGTGCGCGGG CCGCGCCATC TGCCGCTGCT GCCGCCGCCT GCGCTTTTCG TCGCGGCCGA CTACGACACG CTGGCCGCGC ACGAGAACTA CAGCAAGCGC CTGCCCGGCA ATCCGGACCG CCACGCCGAC CTGCCGTCGC TCGAAAAAAA GCTGGCAGGC GCGGTGGTCG CGCATGCGGT GGAAGGACTG GCTCCCGACT TTCCGCTGCT GCAGCTGGAC GATCCGATCC GCGGAATGAT CGCGCTCGGC GAGGCGGCGC GCGCGCGTTT CAAGGGCTTG GTGGTGGGGG TGACCGGCAC GGTCGGCAAG TCGTCCACCA TTGCCATGCT GCGCGACCTG CTGCCCGAAG CCGCGCGCGT GCACACCACC GTGGACAACT ACAACTCGCG CGTCGGCGTG CCGGCCATGC TGGCCAATCT CGGGCCCGAT GCGGACGTGT GCATTCTCGA AATGGCGCAG AGCGGCCTGT GGATGGACCG GGGGCCGATC TCGCTGATGG CGCGGCCGCA CGTGGCCATC ATCACCGAGG TCGGGCTGTC GCAGACCCGC CAGGCCTCGA CCCTCGAACA GACGGCGGCC TTCAAGTCGC GCATCTTCCT GGGGCTGGAG CCTGGCGGCG TCGCGATCGT GCCCGACCAC ATTCCCTGCC TCGCGCAGGT GGTGCGCGCC GCCGCACTCA CGGCGGGCGC CATCTGGGTG GTGGGGCCCG GGCCGGACGC CAACATCCGC GTGCTCGACA CGCACCCCGA GCCCGGCGGC GGCTGCCGCG TGCGCATTGC GACGGAGGGC CGCAGCTTCG AGTACCTGTT TCCCATCGCG AGTGCCGGGC TGGTGCGCAA CTCGGCCCTG GCGTTTGCCG CGCTGCTGGC GATGGGCTTC GATGCGGATG CCGCCTGCGC GCGCATGCCC GGGGTGCGGC TTCCCGCGTC GGTGATGCAG GTGCGCACGC TGCGCACCCG GGCCGGCATC GAGGCCACGC TGATCGACGA CAGCTGGAAC GCCGAGGTCA TGTCGATGCG CAACGCGATG GAGTTCGTGC GCACCTACCG GCGTGCGGAC GATGCGCCGG TGCAGCGCAA GATCGGCGTG CTCGGGCGCA TCGTGAACCT CGGGCGCGAT TCGCAAGCCC TGCACCGCGG CCTTGCCGAA CCGCTGCTGG CCTCCGGCAT CGAGCACCTG GTGACGCACG GCGCAGAGAT GCGCTGGCTG CGCGAGGATG TACCGGCCGG GCTGCTCGGA CCGCACTTCG ACGATGCCGA GAAACTCGCG GACTACCTCG GCACCTTCCT GCGCGACGGC GACCTGGTGC TGCTGAAGGG CGACCGCGTC GGTTCCGACT TCGGCACCAT CCCCCAAAGG CTGCAGCAGC TGTGA
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Protein sequence | MDLLNRARQI LAAPDGTLPG AAATPEAGCV VLIAMGDGTS RARVVAGRAE SAEQAWQQAS DAAVALAQRI GMQPRHVRVE LVDQVEPMSW GALKARLAGT RRNYFNHGVS FDAKFEVALL APEINGSAVF YNGTVDHAEP NPGNLRLHAK RRFGAELDFP QDDAAPVWCF TTRAAYADTE GAWPITPAGQ SAGYRTLPEW GAGQVRSLVD SASDYLAAQV KPTGEFHYGW FPCFDRAIPT YNTLRHASST YALLEAWELT RSDSQKAAID RSLSLLTKRL IRQAELPGGT RAAYLLDVGD EIKLGGNAVC LLALVKYTEL TGDPQYLPLM EQLALGIQAM QDPASGRFVH VLNYPSLEVK DAFRVIYYDG EAAFGLMRLY GLTRDERWLA VVEKAFEHFI AAEHWRAHDH WLSYCVNELT RVRPETRYYQ FGLRNVADYL DFVLERITTF PTLLELMMAA REMVERLAAD PALRPLLEGF DRAKFDRALE HRARYLANGY FWPELAMFFR NPDRITGSFF IKHHSFRVRI DDVEHYLSGY VAYHRLLKHR EASGLPAACG IPQATSAPAP ADSGRAPVAV WGGDVNLGRR LHYRLAELGG PQEMLGGIAA LREADLRIAN LECVVATTGE QGVEKDESSP YYYRARPEML AVLAEAGIGM VATANNHSGD YGAAALMEQQ ALLDAAGIAH AGTGRNLDEA LRPAIGRAGG VRVALFSLDA TQPRFAATAD APGAAWLPLG DPAAWTATLA PRIAAARAEA DVVLVAVHWG ANLETAPSQA EIDVGHAIVD AGADAILGSS AHVLQGIEIY RGRPILHDAG DLLFESVRND LGDSGVFSLA LSVRGVEEVV FTPIGVGFGF SRQHTGAPAE AASARFAEQC RALGTEMVPV AGGRCAVRLS PPERRPALAA AAPAARAPRA IRPLLAPRPE WMADAVPPDA WVPPLQAGPL RLVGVRCAPR QLVGRRMLWV ESFWTADAPV TADLRIQFRA VPLRSTRMPA WGEGMDHEPC DWMWPTSRWE PGRIYRDRYG LRAPRAGLLE SDVLQLELRV RGALAGLPPA RRLSIWCGLR VPGAPVPLPA RPAPVPAALH PGASPTPAPV WTAEHLQRIT GGRWLVEPPP GWFVNSVVRG PRHLPLLPPP ALFVAADYDT LAAHENYSKR LPGNPDRHAD LPSLEKKLAG AVVAHAVEGL APDFPLLQLD DPIRGMIALG EAARARFKGL VVGVTGTVGK SSTIAMLRDL LPEAARVHTT VDNYNSRVGV PAMLANLGPD ADVCILEMAQ SGLWMDRGPI SLMARPHVAI ITEVGLSQTR QASTLEQTAA FKSRIFLGLE PGGVAIVPDH IPCLAQVVRA AALTAGAIWV VGPGPDANIR VLDTHPEPGG GCRVRIATEG RSFEYLFPIA SAGLVRNSAL AFAALLAMGF DADAACARMP GVRLPASVMQ VRTLRTRAGI EATLIDDSWN AEVMSMRNAM EFVRTYRRAD DAPVQRKIGV LGRIVNLGRD SQALHRGLAE PLLASGIEHL VTHGAEMRWL REDVPAGLLG PHFDDAEKLA DYLGTFLRDG DLVLLKGDRV GSDFGTIPQR LQQL
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