| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1030 |
|---|
| Symbol | |
|---|
| ID | 7972001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1123379 |
|---|
| End bp | 1124695 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791626 |
|---|
| Product | lytic murein transglycosylase |
|---|
| Protein accession | YP_002942947 |
|---|
| Protein GI | 239814037 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCAA CCAGCAGCAC CTCATTCCTG CAGTCCACCA TCCGGCCCGC CCTTGTGGCC
GCAGCCACCG CGGCGCTTGT CGCGGGCTGC GCTTCCGCAC CGCCCGGGCC GGCGTCGCAG
CCGCCGGGCT CCACGGCGAG TCAGCGGCCC GCAACTGCGC CCGCGCCCGC AGCCCCTGAC
GCTGCCGCGC TCGAGCAGCA GCGCTTCGCC AAATGGGTGG CAGACTTCCG CGCCACCGCA
CGCGCATCCG GCATCCGCGA AGCCACCTTG CAAAGCGCCT TCGACCAGGT GCAGTTTCTT
CCGCGCGTGA TCGAGCTGGA CCGCGCCCAG CCCGAGTTCA CACGCACGGT CTGGGACTAT
CTCGACAACA CCGTCTCGCC CCAGCGCATT GCCACGGGCC AGGACAAGCT GCAGCAGGTG
CGCGCCGAAG CCGATGCGGC CGCCGCGCGC TATGGCGTGC CGGCCACCGT CGTCGTCGCC
ATCTGGGGCA TGGAAAGCAA CTACGGCGGC AACTACGGCA GCACCCCGGT CATCGACGCG
CTGGCCACGC TCGGCTTCGA GGGCCGGCGC GAAGACTGGG CGCGCCGCGA GCTGCTCGCG
GCACTGAAGA TCCTCGACAG CGGCGACATC GCGCGCGACC GCATGATCGG CTCCTGGGCG
GGCGCCATGG GCCAGACGCA ATTCCTGCCG TCGAACTTCC TGGCCTACGC GGTGGATGCC
GACGGCGACG GGCGCCGCGA CATCTGGGGC AGCATGCCCG ACGTGGTGGC CTCGACGGCC
AACTTTCTCT CGCGCTCGGG CTGGCAGGCC GGCATGCCGT GGGGCGTGGA GATCAAGTTG
CCCGCGGGCT TCGACTACGG CCGCGCCGAC ATGGCCGTGC GCCAGCCGAG CGCGCAGTGG
GCGGCCGAGG GAATCACGAG CATGGACGGC CAGCCGCTGC CGGAATTTGC CGATGGCTCG
GTGCTGCTGC CCGCGGGCGC GCAGGGGCCG GCCTTCCTGG TCGGGCCGAA CTTTCGCGCC
GTGCTGCGCT ACAACAACTC GACCAACTAC GCGCTCGCCG TGGGCCTGCT CGCGCAGCGC
CTGGGCGGCG GCCCCGACGT GCAGGCGCCA TGGCCGAGGA ACCTGACGGC GCTCTCGCGC
AGCCAGATCG CCGAACTGCA GGCCGCGCTC ACCCGGCGCG GCTTTGCCAC TGGCGCGGCC
GACGGCGTCA TGGGCCCCGC CACGCGCGAA GGGCTGCGCC GCTACCAGCG CAGCGTGGGC
CTGCCCGCGG ACGGCTACCC GAGCGCGGAG CTGCTGCAGC GCCTGCAGCA GCCCTAG
|
|---|
| Protein sequence | MHPTSSTSFL QSTIRPALVA AATAALVAGC ASAPPGPASQ PPGSTASQRP ATAPAPAAPD
AAALEQQRFA KWVADFRATA RASGIREATL QSAFDQVQFL PRVIELDRAQ PEFTRTVWDY
LDNTVSPQRI ATGQDKLQQV RAEADAAAAR YGVPATVVVA IWGMESNYGG NYGSTPVIDA
LATLGFEGRR EDWARRELLA ALKILDSGDI ARDRMIGSWA GAMGQTQFLP SNFLAYAVDA
DGDGRRDIWG SMPDVVASTA NFLSRSGWQA GMPWGVEIKL PAGFDYGRAD MAVRQPSAQW
AAEGITSMDG QPLPEFADGS VLLPAGAQGP AFLVGPNFRA VLRYNNSTNY ALAVGLLAQR
LGGGPDVQAP WPRNLTALSR SQIAELQAAL TRRGFATGAA DGVMGPATRE GLRRYQRSVG
LPADGYPSAE LLQRLQQP
|
|---|
| |