| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1002 |
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| Symbol | |
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| ID | 7971973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1100747 |
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| End bp | 1102342 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791598 |
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| Product | filamentation induced by cAMP protein Fic |
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| Protein accession | YP_002942919 |
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| Protein GI | 239814009 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3177] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACTC CCGTCGCCGT TCGTACAGCC ACCCCGGCGC AGCGGCGGCT CGTCACCGCC
CTGGAGGCAC TGCGGACCTT GCAGGAGCAA GGCCGGAGCG TCTTCAATAC GGGCGAGTTC
TCTCGCGCGG ATCGCGAAGC GTTGGTGGGC GCGGGGTTTC TCCAGCCGGT GATCCAGGGT
TGGTACATGT CCGCCAGCCC TTCCGCCAAG GCTGGTGACA CGACGCCGTG GATCGCGGGG
ATGAAGGACT TCATTGCCGC CTACTGCAAC GCCCGATTCG GCTCCGACTG GTGCGTGTCG
GCGGAATATT CGCTGAAACT GCACGCCGGG ACGACCTTGC TGCCCAAGCA GGTCGTCGTG
CATGCGCCAC TGGGCAAGAA CGGCGTGCTC GACTTGCCGA ACGGGTTCTC GCTCATGGAC
TACCAGGCGA GGGATTTTCC AGCGGCCGAC CGGCGCGACA GCGTCGGCAA TCTCCGTACG
ATGACACTGG CCCAGGCGCT CCTGAAAGTG CCGGAGAACT TCTTCAGGGC CTCCGCCGAG
GACGCGCAAG TCGCGCTGCT GTCCATCAGC GACGCGTCCG AGCTGAGCCG CGTGCTTGCG
GAAGGCAACC ACGGCACGGT TGCCGGCCGC CTCGCCGGTG CGTTCCGCGC GGTGGGCCGG
GACGCGATCG CGGATGACAT CGTCGGTTTC ATGCGGGCCT TGGGCAATCA GGTCACCGAG
GCCAATCCAT TCGAAACCCC TCTGCGAATT GTTCCGGGCG ACCGCATCGA GTCCCCCTAT
GTTTCCAGAT TGCGGCTCAT GTGGGCCTCG ATGCGCGACG ATGCGGCGAG CGCCTTCCCG
CTGAAGGAGC CGGGCCGGCC TGAGGACGTT GCCGCATACA TGCGCGCGGT CGAAGACGCC
TATGTCACCG ATGCCTATCA CTCGCTGTCC ATCGAAGGCT ACAGAGTCAC GCCGGAACTG
ATTCGCCGCG TCGCGAACGG AGACTGGAAC GAGGACATCC ACGAGCAGGA CCACCAATCC
CGGGATGCGA TGGCGGCGCA CGGCTATTGG CTTGCGCACA ACGAGGTCAA GGCGTCCATC
CAGAGTATCT TCGCGGGCGC GAACGCCGGG GACGTTCTCA AGGGCGACCA CGGTGCCTGG
TTCCGGGCGA TGTTCTCGCC CAGCGTGACC GCAGGCCTCC TCGCGGCATC GGATCTCGCG
GGCTACCGGG GCCATCAGGT CTACATCCGC AACGCGCAGC ACGTGCCGCC TCCGCGCGAA
GCGGTGCGCG AGATGATGCC GGTCCTGTTC GAGCTGTTGC GCGACGAGCC CTCGGCCGCG
GTGCGCGCGG TGCTGGGCCA TTTCATCTTC GTCTTCATTC ATCCGTACAT GGACGGCAAT
GGACGGCTCG GGCGCTTCAT CATGAACGCC ATGCTGGCCT CTGGCGGATT CCCCTGGACG
GTGTTGCGCC TCGAAGATCG CGATCGCTAT ATGGCCGCGC TGAACTCAGC AAGCGGCCAG
GGCGACATCA AGCCCTTTGC GGCATTCATT GCACAGAGCC TGGGTGCGGC CAGCGGGGCG
CAGGCCCGTT CGCCGCGAAG CGACCCGCGC GGTTAA
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| Protein sequence | MATPVAVRTA TPAQRRLVTA LEALRTLQEQ GRSVFNTGEF SRADREALVG AGFLQPVIQG
WYMSASPSAK AGDTTPWIAG MKDFIAAYCN ARFGSDWCVS AEYSLKLHAG TTLLPKQVVV
HAPLGKNGVL DLPNGFSLMD YQARDFPAAD RRDSVGNLRT MTLAQALLKV PENFFRASAE
DAQVALLSIS DASELSRVLA EGNHGTVAGR LAGAFRAVGR DAIADDIVGF MRALGNQVTE
ANPFETPLRI VPGDRIESPY VSRLRLMWAS MRDDAASAFP LKEPGRPEDV AAYMRAVEDA
YVTDAYHSLS IEGYRVTPEL IRRVANGDWN EDIHEQDHQS RDAMAAHGYW LAHNEVKASI
QSIFAGANAG DVLKGDHGAW FRAMFSPSVT AGLLAASDLA GYRGHQVYIR NAQHVPPPRE
AVREMMPVLF ELLRDEPSAA VRAVLGHFIF VFIHPYMDGN GRLGRFIMNA MLASGGFPWT
VLRLEDRDRY MAALNSASGQ GDIKPFAAFI AQSLGAASGA QARSPRSDPR G
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