Gene Vapar_0957 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0957 
Symbol 
ID7970132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1053430 
End bp1054038 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content67% 
IMG OID644791553 
ProductN-acetyl-anhydromuranmyl-L-alanine amidase 
Protein accessionYP_002942874 
Protein GI239813964 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.639508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGACGA CTGAAGCACC GGCAAGCAAC GACGACGGGC TCTGGCACGC CGGCTGGTAC 
CGCTTTGCCA AGGCGCTGCG CTCGCCGAAT TTCGGGCCCC GGCCCGCGGG CGCGCAGACC
GACCTGATCG TGCTGCACTC CATCAGCCTG CCGCCCGGCG AATACGGCGG CGAGGCCGTG
CAGCAGCTCT TCACCAACCA GCTCGACTGG GACGCGCACC CCTACTTCCA GTCGATCCGC
GGCCTTGCGG TTTCCTCGCA CTTCTATGTG CGGCGCAACG GCGAGCTCTG GCAGTTCGTG
AGCTGCGACG ATCGCGCCTG GCATGCCGGC GTGTCGTCGT GGCGCGGCCG CGAGAACTGC
AACGACGACT CCATCGGCAT CGAGCTCGAA GGCCTCGAAG GCCAGCCCTT CGAAGAAGCA
CAGTACGAGG CGCTGGCCAG CCTCTGCCCC GCCATCGCGC AGCACTACGC CATCGCGCAC
ATCGCCGGCC ACGAGCACAT TGCGCCAGGC CGAAAACAGG ACCCCGGCGC CGGCTTCGAT
TGGCAATTGC TGCGCGGGCA CCTCGGCTGG AGTCCACAGA TGTTTCCTCC GCAGGTGGTG
CAGCGCTAA
 
Protein sequence
MPTTEAPASN DDGLWHAGWY RFAKALRSPN FGPRPAGAQT DLIVLHSISL PPGEYGGEAV 
QQLFTNQLDW DAHPYFQSIR GLAVSSHFYV RRNGELWQFV SCDDRAWHAG VSSWRGRENC
NDDSIGIELE GLEGQPFEEA QYEALASLCP AIAQHYAIAH IAGHEHIAPG RKQDPGAGFD
WQLLRGHLGW SPQMFPPQVV QR