| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0956 |
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| Symbol | |
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| ID | 7970131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1050164 |
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| End bp | 1053079 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791552 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_002942873 |
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| Protein GI | 239813963 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.328606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACAG CCCTGAACAC CCCATCGACC TCGCGTGCCG TTCCCTCCAC GCCCACGCAG
CAGCAGCGCG ACACCGCCGG CTCGCCCGCC GGACAGAACC TCGCGCACTA CCAGATCATC
CGCCGCAACG GCGCCGTGGT TCCCTTCGAA CCCAACAAGA TCGCTATCGC GATGATGAAA
GCCTTCCTGG CCGTGCACGG CACCCAGGGC GCGGCTTCGG CCAGCGTGCG CGAAACCGTC
GACGCGCTCA CGCAAGGCGT GATCCGCGCC ATGGTGCGTT CGCGTCCGGG CGGCGGCACC
TTCCACATCG AAGACGTGCA GGACCAGGTC GAACTCGGCC TGATGCGCGG CGGCCATCAC
GAGATCGCGC GCGCCTACGT GCTCTACCGC GAGCGCCGCA CGCAGGAGCG TTCCAAGCAG
GTCGAGCAGG AAGCGCCCGC CACCCCCACG CTGCACGTGC TGGACAACGG CGAACGCGTC
GCGCTCGACC TGAACCAGCT CAAGGGCCTG ATCGAATCGG CCTGCGAAAA CCTGGGCGAC
AGCATCACCG CTGCGCCGAT CGTCGCTGAA ACGATGCGCA ACCTGTACGA CGGCGTGCCG
CTCGACGAGG TCTACAAGGC CTCGATCCTG GCGGCCCGCA CGCTGATCGA AAAAGACCCC
GACTACACCT TTGCCACCGC CCGCCTGCTG CTGCACACGA TCTTCAAGGA GATCATCGGC
CGCGAAGTGA TGCCCGCCGA GCGCGCCACC GCCTACGCCG ACTACTTCCC GCAGTTCATC
AAGAAGGGCG TCGAGAACGA CCTGCTCGAC GAGAAGCTGC TGCAGTACGA CCTGCCGCGC
CTGGGCGCCG CGCTCAAGGC CGAACGCGAC AACCAGTTCG ACTACCTCGG CCTGCAAACG
CTGTACGACC GCTACTTCCT GCACGTGCGC AAGTCGCGCA TCGAACTGCC ACAGGCCTTC
TTCATGCGCG TGGCCATGGG CCTGTCGCTC GGCGAAATCG ACCGCGAGGC CCGCGCCATC
GAGTTCTACG AGGTGCTGTC GTCCTTCGAC TTCATGTCGA GCACGCCCAC CCTGTTCAAC
GCCGGCACGC TGCGCTCGCA GCTGTCCAGC TGCTACCTGA CCACCGTGCC CGACGACCTG
GACGGCATCT ACGAATCGAT CAAGGAAAAC GCGCTGCTCT CCAAGTTCGC GGGCGGCCTG
GGCAACGACT GGACCCGCGT GCGCGCGCTC GGCAGCCACA TCAAGGGCAC CAACGGCGAA
TCGCAGGGCG TGGTGCCCTT CCTCAAGGTG GTCAACGACA CGGCCGTGGC CGTGAACCAG
GGCGGCAAGC GCAAGGGCGC CGTCTGCACG TACCTGGAAA CCTGGCACCT CGACATCGAG
GAGTTCCTGG AACTGCGCAA GAACACCGGC GACGACCGCC GCCGCACGCA CGACATGAAC
ACCGCCAACT GGATCCCCGA CCTCTTCATG CGCCGCGTGA TGGAAAAGGG CACCTGGACG
CTGTTCTCGC CCTCCAACGT GCCCGACCTG CACGACCTGT TCGGCGCCGA CTTCGAGAAG
GCGTATGTCG CCTACGAAGA AAAGGCCGCG CGCGGCGAGA TCAAGCCTGC CCGCACCATC
CAGGCCTCGG ACCTGTGGCG CAAGATGCTC ACGATGCTGT TCGAGACCGG CCATCCCTGG
ATCACGTTCA AGGACGCCTG CAACGTGCGC TCGCCGCAGC AGCACGCCGG CGTGGTGCAC
TCGTCGAACC TGTGCACCGA GATCACGCTG AACACCAGCG ACACCGAAAC CGCCGTCTGC
AACCTGGGTT CGGTGAACCT GCTGCAGCAC CTGAAGGACG GCAAGGTCGA CCAGGAAAAG
CTCAAGCGCA CCATCTCGAC CGCGATGCGC ATGCTCGACA ACGTGATCGA CATCAACTAC
TACGCCGTGA AGAAGGCGCG CGACTCGAAC CTGCGCCACC GCCCGGTCGG CCTGGGCCTG
ATGGGCTTCC AGGACGCGCT GTACGAACTG CGCATTCCCT ACGCTTCGCA GGAAGCCGTG
CAGTTTGCCG ACGAGTCGAT GGAAGCCATC TGCTACCACG CCTACTGGGC CTCGACCGAG
CTGGCCCGCG AACGCGGCAA GTACTCGAGC TACAAGGGCT CGCTGTGGGA CAAGGGGATC
CTTCCGATCG ACACGCTCGA CCTGCTCGAA AAAGCCCGCG GCGGCTACGT CGAAGTGGAC
CGCTCGGCCA CGCTCGACTG GGAGGCCCTG CGCCAGAAGA TCAAGGCCGA CGGCATGCGC
AATTCCAACT GCGTGGCCAT CGCCCCGACC GCGACCATCT CGAACATCAT CGGCGTCGAC
GCTTCCATCG AGCCCTGCTT CGGCAACCTC TCGGTCAAGT CGAACCTGTC GGGCGAATTC
ACCGTCATCA ACCACTACCT GGTGCGCGAC CTGAAGCGCC TGGGCCTGTG GGACGACGTG
ATGGTGATGG ACCTGAAGCA CTTCGACGGT TCGCTGCGTC CGATCGACCG CGTGCCGCAG
GACGTGAAGG CGCTCTACGC CACCGCGTTC GAAGTCGAGA CCACCTGGCT GGTCGAAGCC
GCAGCGCGCC GCCAGAAGTG GATCGACCAG GCGCAGTCGC TCAACATCTA CATGGCCGGC
GCATCGGGCA AGAAGCTCGA CGACACCTAC AAGCTCGCAT GGCTGCGCGG CCTGAAGACC
ACCTACTACC TGCGCACGCA GAGCGCGACG CACGCCGAGA AATCCACCGT GCAGTCGGGC
CGCCTCAACG CGGTGTCGTC GGGCAGCGAT GCCTCTTCGG GCATGAGCGC ACTCGAAGCC
GCAGCTGCCG CAGCGAAGGC GCAGATGAGT GCAATGCCTG CCACCGACAT CGCGTTCTGC
GGCGTCGACG ATCCGACTTG CGAAGCATGC CAATGA
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| Protein sequence | MQTALNTPST SRAVPSTPTQ QQRDTAGSPA GQNLAHYQII RRNGAVVPFE PNKIAIAMMK
AFLAVHGTQG AASASVRETV DALTQGVIRA MVRSRPGGGT FHIEDVQDQV ELGLMRGGHH
EIARAYVLYR ERRTQERSKQ VEQEAPATPT LHVLDNGERV ALDLNQLKGL IESACENLGD
SITAAPIVAE TMRNLYDGVP LDEVYKASIL AARTLIEKDP DYTFATARLL LHTIFKEIIG
REVMPAERAT AYADYFPQFI KKGVENDLLD EKLLQYDLPR LGAALKAERD NQFDYLGLQT
LYDRYFLHVR KSRIELPQAF FMRVAMGLSL GEIDREARAI EFYEVLSSFD FMSSTPTLFN
AGTLRSQLSS CYLTTVPDDL DGIYESIKEN ALLSKFAGGL GNDWTRVRAL GSHIKGTNGE
SQGVVPFLKV VNDTAVAVNQ GGKRKGAVCT YLETWHLDIE EFLELRKNTG DDRRRTHDMN
TANWIPDLFM RRVMEKGTWT LFSPSNVPDL HDLFGADFEK AYVAYEEKAA RGEIKPARTI
QASDLWRKML TMLFETGHPW ITFKDACNVR SPQQHAGVVH SSNLCTEITL NTSDTETAVC
NLGSVNLLQH LKDGKVDQEK LKRTISTAMR MLDNVIDINY YAVKKARDSN LRHRPVGLGL
MGFQDALYEL RIPYASQEAV QFADESMEAI CYHAYWASTE LARERGKYSS YKGSLWDKGI
LPIDTLDLLE KARGGYVEVD RSATLDWEAL RQKIKADGMR NSNCVAIAPT ATISNIIGVD
ASIEPCFGNL SVKSNLSGEF TVINHYLVRD LKRLGLWDDV MVMDLKHFDG SLRPIDRVPQ
DVKALYATAF EVETTWLVEA AARRQKWIDQ AQSLNIYMAG ASGKKLDDTY KLAWLRGLKT
TYYLRTQSAT HAEKSTVQSG RLNAVSSGSD ASSGMSALEA AAAAAKAQMS AMPATDIAFC
GVDDPTCEAC Q
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