Gene Vapar_0913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0913 
Symbol 
ID7970088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1003244 
End bp1004992 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content67% 
IMG OID644791509 
ProductPeptidoglycan glycosyltransferase 
Protein accessionYP_002942830 
Protein GI239813920 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0768] Cell division protein FtsI/penicillin-binding protein 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGCC GCAGCGTCCG CTACACCACC AGCCCCTTGC TCGCGAGCAA GACGCCGGTC 
TGGCGCAGCA AGTTCATCGT CGCCGGCATC GCCTTCGGCT TCGTGGTGCT GGCGGGCCGG
GCCGCCTACG TGCAGGTGTT CAACAACAGC TTCTTCCAGC GGCAGGGCGA AGTGCGCTTT
GCGCGCACGC TCGAGCTGCC GGCCAACCGC GGGCGCATCC TCGACCGCAA CGGCCTCATC
CTGGCGTCCA GCGTGGTGGC GCCGAGCATC TGGGCCATTC CGGAAGACAT CGAGCGCGAC
GACCCCGAGG TGCGCGCCAA GCTCAAGCAG GTGGCCAAGC TGCTCGAGAT GCCGCAGAAG
GACTTCGACA AGAAGCTCGA GGACGAGGAC AAGACCTTCG TCTGGATCAA GCGCCAGGTC
GACGAGCCGA TTGCCAAGCA GATTGCCGCG CTCAACCTCA AGGGCATCTA CCAGCGCAAG
GAATACAAGC GCCAGTACCC CGAGGGCGAG GCCGCGGCGC ACGTGGTGGG CTTCACCAAC
GTCGAGGACA ACGGGCAGGA AGGCATCGAG CTTTCCTTCA ACAAGGAGCT GGCCGGCAAG
GCCGGGTCGC GCCGCGTCAT CAAGGACCGC CTGGGCCGCG TGGTCGAGGG CGTGGGCGAA
CAGGTGCCGC CGGTCGACGG CAAGGACATC CAGCTCAGCG TCGACAGCAA GGTGCAGTTC
TTCGCCTACC AGAAGCTGCG CGACGCCGTG ACCGCGCGCC GTGCCAAGGC CGGCAGCGTG
GTGGTGCTGG ACGCGGTCAC CGGCGAGGTG CTGGCGCTGG CCAACTACCC GAGCTACGTG
CCCGACAAGC GGCAGAACCT CACGGGCGAG CAGCTGCGCA ACCGCGCGCT CACCGACACC
TTCGAGCCCG GCTCGACCAT GAAGCCGATC ACCGTGGCCA TGGCGCTGGA GGCCGGCCGC
GTGAAGCCCT CGACGCTGAT CGAGACCTCG CCCGGCCGCT TCCAGCTGGG CGGCTTCACC
ATCAGCGACA CGCACAACTA CGGAACGCTC ACGGTCGAGG GCGTGATCCA GAAGTCCAGC
AACGTGGGCG CGCTCAAGAT CGCGCAGAAG ATGACCCCGC ACGAGATGTG GGACACCTAC
ACCGCGCTCG GCTACGGCCA GAAGCCGCAG ATCCAGTTCC CCGGCGCGGT CACGGGGCGC
CTGCGCCCCT GGAAGACCTG GAAGCCCGTG GAGCAGGCCA CGATGGCCTA TGGCTACGGC
CTGTCGGCGT CGCTCTTCCA GATGGCGCAT TCGTACACCG CCTTCGCGCA CGACGGCGCG
ATCATTCCGG TCACCATCCT CAAGAGCACC GAGTCGCCCG CGGGTGTGCG GGTGTTCTCG
CCGTCGAACG CGCTGGCGGT GCGCAAGATG CTGCAGATGG CGGCAGGCCC GGGCGGCACC
GGCACGCGCG CGCAGACCGT CGGCTATTCG GTCGGCGGCA AGTCGGGCAC CGCGCACAAG
CAGGTTGGCA AAGGTTACGC GAGCAACAAA TATCGCGCGT GGTTCACCGG CATGGCACCG
ATCGAAAAGC CGCGCATCAT CGTCGGCGTG ATGATCGACG AGCCGAGCGA CGGCCAGTAC
TTCGGCGGCG TGGCCGCCGC GCCCGTTTTC AGCGAGGTCG TGCAGCAGAC CCTGCGCATG
ATGAACGTTC CGCCCGACCT CGCGGTCAAA CCGCTGGTGG TGACGCAAGG CGTCGACGAG
AGCTTCTGA
 
Protein sequence
MSRRSVRYTT SPLLASKTPV WRSKFIVAGI AFGFVVLAGR AAYVQVFNNS FFQRQGEVRF 
ARTLELPANR GRILDRNGLI LASSVVAPSI WAIPEDIERD DPEVRAKLKQ VAKLLEMPQK
DFDKKLEDED KTFVWIKRQV DEPIAKQIAA LNLKGIYQRK EYKRQYPEGE AAAHVVGFTN
VEDNGQEGIE LSFNKELAGK AGSRRVIKDR LGRVVEGVGE QVPPVDGKDI QLSVDSKVQF
FAYQKLRDAV TARRAKAGSV VVLDAVTGEV LALANYPSYV PDKRQNLTGE QLRNRALTDT
FEPGSTMKPI TVAMALEAGR VKPSTLIETS PGRFQLGGFT ISDTHNYGTL TVEGVIQKSS
NVGALKIAQK MTPHEMWDTY TALGYGQKPQ IQFPGAVTGR LRPWKTWKPV EQATMAYGYG
LSASLFQMAH SYTAFAHDGA IIPVTILKST ESPAGVRVFS PSNALAVRKM LQMAAGPGGT
GTRAQTVGYS VGGKSGTAHK QVGKGYASNK YRAWFTGMAP IEKPRIIVGV MIDEPSDGQY
FGGVAAAPVF SEVVQQTLRM MNVPPDLAVK PLVVTQGVDE SF