Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0839 |
Symbol | |
ID | 7972054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 924672 |
End bp | 925880 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644791437 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_002942758 |
Protein GI | 239813848 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00466449 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCATGC TGAATTCCTC GCTGCCGCTG GCCGGCGTGC GCGTCCTCGA TCTGTCCCGC ATCCTCGCGG GCCCCTGGTG CGGCATGGTG CTGGCCGACA TGGGCGCCGA AGTCATCAAG GTCGAGCACC CGGGCCGCGG CGACGACACG CGCGACTGGG GCCTGCGTGT CGGCAAGACC GAGACCGCCT ACTTCAACAG CGTGAACCGC AACAAGCGCT CGGTCACGCT CGACCTGCAG ACGCCCGAGG GCCAGCAGAT CGCGCGCGAC CTCGCGAAGC AGTGCGACGT GGTGATCCAG AACTTCAAGT TCGGCGGCAT CGACAAGCTG GGCCTGGGCT ACGAACAGCT CAGCAAGGAG CATCCGGGGC TCATCTACTG CTCGATCTCG GGCTACGACC GCACCGGCCC CGAAGCCGCG CGGCCCGGCT ACGACCTCGT GGTGCAGGGC GAGGCCGGGC TGATGGCGCT CAACGGCGAA GCCAGCCAGC CGCCGCTGAA GTTCGGCGTG GCCATGGTCG ACCTGTTCAC CGGCATGTAC TCGGCGCAGG CCGTGCTCGC GGCGCTCTAC CAGCGCGAGA AGACCGGCAA GGGCCGGCAT GTGGAAATGG CTCTCTTCGA CTGCGGCCTG ATGATCACCG CCTACTACGG CCTCGAGGCG CTGCTGATGG GCGAGGACCC GCCGCGCTAC GGCAACTCGC ATCCGTCGAT CGTGCCCTAC GGCGTGTTCG ACGCGGCCGA CGGCCCGCTC GTGATCACCG TGGGCAACAA CGCGCAGTTC GCGCGCTTCT GCACCGAAGT GATCGAGCGG CCCGACCTCG CGGCCGACGA GCGCTTCAAG ACCAACATCC TGCGCTCGGC GAACCGCGCG GTGCTACTGC CCGAGCTGCA CGCCGAGCTC GCCAGGCGCC AGCGCGCCGA CCTGCTGGCC AGGCTCAGCG CCTCGGGCAT TCCCTGCGGC GAAGTGCTGG GCCTGCTCGA AGCGCTCAAC TCCAGGCGCG CGGCCGATGC CGGCCTCGTG ACCGAGCAGC CGCATCCGGT GGCCGGCAAG GTCAACGTGC TGGCCCCGCC CTACCGCTTC GACGGCGAGC GCCTGCCCGT GCGCAGCGCG CCGCCGCAAC TGGGCGAAGG CACGCACGAG GTGCTGCAGT CGCTGCTCGG CCTGTCGGAC GACCGGCTCG CGCAACTGAA AACCAGCGGC GTCGTCTGA
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Protein sequence | MPMLNSSLPL AGVRVLDLSR ILAGPWCGMV LADMGAEVIK VEHPGRGDDT RDWGLRVGKT ETAYFNSVNR NKRSVTLDLQ TPEGQQIARD LAKQCDVVIQ NFKFGGIDKL GLGYEQLSKE HPGLIYCSIS GYDRTGPEAA RPGYDLVVQG EAGLMALNGE ASQPPLKFGV AMVDLFTGMY SAQAVLAALY QREKTGKGRH VEMALFDCGL MITAYYGLEA LLMGEDPPRY GNSHPSIVPY GVFDAADGPL VITVGNNAQF ARFCTEVIER PDLAADERFK TNILRSANRA VLLPELHAEL ARRQRADLLA RLSASGIPCG EVLGLLEALN SRRAADAGLV TEQPHPVAGK VNVLAPPYRF DGERLPVRSA PPQLGEGTHE VLQSLLGLSD DRLAQLKTSG VV
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