| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0829 |
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| Symbol | |
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| ID | 7972044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 913886 |
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| End bp | 914620 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791427 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002942748 |
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| Protein GI | 239813838 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATCAA ACTGGGATTG GCAGGTCTTC TTGCAAGACC CGGGCGGGAA GTACCCGACC
TATTGGCAAT GGATGCTGTC CGCATGGGGC TGGACCGTGT CCGTGGCCCT GCTGGCGCTC
GTCGTTGCGC TGGTGCTGGG TTCGCTGGTC GGCATCATCC GCACCTTGCC CAACAGCCCG
TGGCTCATAC GCCTGGGCAA TGCCTGGGTC GAGCTGTTCC GCAACATTCC GCTCCTGGTG
CAGATCTTCC TCTGGTACCA CGTGATCCCG GCGCTGGTGC CGGTCATGAA GGGCGTGCCG
AGCTTCGTGC TGGTGGTGCT GGCGCTGGGC TTCTTCACCT CGGCGCGGAT TGCCGAGCAG
GTGCGCTCGG GCATCCAGGC GCTGCCCAAG GGCCAGCGCT ACGCGGGCAT GGCGGTGGGC
TTCACCACGC CGCAGTACTA CCGCTACGTC ATCCTGCCGA TGGCCTACCG CATCATCATT
CCGCCGCTCA CGAGCGAAAC GATGAACATC TTCAAGAACT CGTCGGTGGC GTTTGCCGTG
TCGGTGACCG AGCTCACGAT GTTCGCGATG CAGGCGCAGG AAGAAACCTC GCGCGGCATC
GAGGTGTACC TGGCGGTGAC GGGGCTCTAC GTGATCTCGG CCTTTGCGAT CAACCGCATC
ATGGCGTATA TCGAGAAGAA GACGCGCGTG CCCGGCTTCA TCGTCTCGGC CAGCGCCGGC
GGCGGGGGAC ATTGA
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| Protein sequence | MGSNWDWQVF LQDPGGKYPT YWQWMLSAWG WTVSVALLAL VVALVLGSLV GIIRTLPNSP
WLIRLGNAWV ELFRNIPLLV QIFLWYHVIP ALVPVMKGVP SFVLVVLALG FFTSARIAEQ
VRSGIQALPK GQRYAGMAVG FTTPQYYRYV ILPMAYRIII PPLTSETMNI FKNSSVAFAV
SVTELTMFAM QAQEETSRGI EVYLAVTGLY VISAFAINRI MAYIEKKTRV PGFIVSASAG
GGGH
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